PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g022649m
Common NameCISIN_1g022649mg, LOC102608430
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 295aa    MW: 31303.4 Da    PI: 6.1718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g022649mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.5e-10142186554
                        HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  orange1.1g022649m 142 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 186
                        99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-15135198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-15139196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-7142186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MANNPNEASS TDDFLEQILG IPNFGSAESG LAASDGGLAA GSPMMLQLSS GDGSSHISAL  60
GGGVSSGYHG QVFPLGLSLE QGKGGFLKPE EASGSGKRFP EEHAIKNVFH GQPLPSPVPA  120
APHPPAMRPR VRARRGQATD PHSIAERLRR ERIAERIRAL QELVPSVNKT DRAAMLDEIV  180
DYVKFLRLQV KVLSMSRVGA PGAVAPLVTT DLPLSSVEDE SGEGVRNQPA WEKWSNDGTE  240
RQVAKLMEEN VGAAMQFLQS KALCIMPISL ATAIYHSQPP ESPNLVKPET NPPP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151RLRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443926.10.0transcription factor UNE12
RefseqXP_006479602.10.0transcription factor UNE12
SwissprotO227681e-128UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A067FQX20.0A0A067FQX2_CITSI; Uncharacterized protein
TrEMBLV4U4U80.0V4U4U8_9ROSI; Uncharacterized protein
STRINGXP_006479602.10.0(Citrus sinensis)
STRINGXP_006443926.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-104bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]