PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021896m
Common NameCISIN_1g021896mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 307aa    MW: 34128.2 Da    PI: 5.9888
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021896mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.7e-30130186358
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                        D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers+ dp v++itY  eHnh
  orange1.1g021896m 130 DKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSSADPGVFIITYGAEHNH 186
                        99************************998**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-29115189IPR003657WRKY domain
PROSITE profilePS5081131.984123189IPR003657WRKY domain
SuperFamilySSF1182903.01E-25127189IPR003657WRKY domain
SMARTSM007747.3E-35128188IPR003657WRKY domain
PfamPF031065.4E-25130186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDWDLQAIVR GCSTEASIDS VMDKPQSYNF SPSSLQQDVR FKFPDVSETT TILDELEELY  60
KPFYPQTILT STSISAPTEV NKKPKKLRKQ QRKLSDSASN TDHPAAQPKG GKNQHKRVVQ  120
RVTADCLACD KWAWRKYGQK PIKGSPYPRS YYRCSSSKGC LARKQVERSS ADPGVFIITY  180
GAEHNHGHPT RRSALAGSTR SKLASMSKAQ GPAQNKPLEP ASEASAELGD LVYQGNIKKE  240
DENVFLDGQE IELVMPDLTF SDELMFPSLE DLEGFLLDQF PDHNINMSAD DNSWFIDESV  300
TLNGGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-18118189474WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476490.10.0WRKY transcription factor 22-like isoform X2
TrEMBLA0A067GLN80.0A0A067GLN8_CITSI; Uncharacterized protein
STRINGXP_006476490.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60902545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-40WRKY family protein