PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021744m
Common NameCISIN_1g013881mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 309aa    MW: 33327.5 Da    PI: 9.027
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021744mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.3e-08113133526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        lCr++ + G C yG++CkF H+
  orange1.1g021744m 113 LCRNWVQ-GNCMYGEKCKFLHS 133
                        8******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.1833258IPR000571Zinc finger, CCCH-type
SMARTSM003560.0713257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.164108135IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4109134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.55E-6110133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-8113131IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-6113133IPR000571Zinc finger, CCCH-type
SuperFamilySSF509784.21E-18130275IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.104.0E-18132275IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.0E-5139178IPR001680WD40 repeat
PfamPF004003.2E-4141178IPR001680WD40 repeat
PROSITE profilePS5008213.249146187IPR001680WD40 repeat
PROSITE profilePS5029412.315146187IPR017986WD40-repeat-containing domain
PROSITE patternPS006780165179IPR019775WD40 repeat, conserved site
SMARTSM0032012218255IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDFDAHGGNK RVFHRLGGGG GDGGGGGLST ADTRQKVCNY WRAGKCNRFP CPYLHRELPL  60
PPAATANGAA AKRFANNTWG RNNNFNNHSN NYRAGNSKNS NINNRAVIKT DILCRNWVQG  120
NCMYGEKCKF LHSWTVGDGF KLLTQLEGHQ KVVSGITLPS GSDKLYSGSK DETVRVWDCA  180
SGQCAGVINL GGEVGCMISE GPWIFIGVTN FVKAWNTQTN TDLSLSGPVG QVYAMAVGND  240
LLFAGTQDGA ILAWKFNVTT NCFEPAASLK VHTDSNRAHF SRDVTSLLGS VSFIMFIGQN  300
NKGVVCYR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421832.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ21e-118C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A067FA980.0A0A067FA98_CITSI; Uncharacterized protein
STRINGXP_006421832.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-113zinc finger WD40 repeat protein 1