PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021556m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 312aa    MW: 35050.1 Da    PI: 9.0876
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021556mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000235476123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C + F++   L  H+++H
  orange1.1g021556m 54 YSCSFCRREFRSAQALGGHMNVH 76
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.23E-65180No hitNo description
PROSITE profilePS5015711.2195481IPR007087Zinc finger, C2H2
SMARTSM003550.00985476IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEQAGYCWMW NKRKHDLNSH FPSTNSYDDS WEEQAFAEDA AGPLGGCIWP PRSYSCSFCR  60
REFRSAQALG GHMNVHRRDR ARLKQSSSSN PQNEIHHHDH QFQNNNDHHL QNNNHPFASL  120
GFHQYPSQQL CNFVYNPSPN SDPVVIASSS SPSRVVSAHP STQKTRPDKT FVIPSLSSPI  180
AQEQQHKRSP ISSPKSCSNS VADKNNSTIV KSACRVKADY VKTDLSVSLN LVVRRTRPTL  240
STGKEAAVGC KRRRTEASSL PFFLKPYHLQ SEEHKILNPS SIEDLDLELR LGDPPPKSLM  300
LSHISIWSLQ S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-124976229superman protein
2l1o_A1e-124976229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.95221e-162root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480886.10.0zinc finger protein 10
TrEMBLA0A2H5P6A80.0A0A2H5P6A8_CITUN; Uncharacterized protein
STRINGXP_006480886.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-27C2H2 family protein