PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021178m
Common NameCISIN_1g020987mg, LOC102626792
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 317aa    MW: 34927 Da    PI: 9.8854
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021178mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.64.1e-19179212134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  orange1.1g021178m 179 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 212
                        *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.61E-13172217No hitNo description
SMARTSM004012.8E-18173224IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.993173209IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-15177213IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.61E-14178210No hitNo description
PfamPF003207.1E-17179212IPR000679Zinc finger, GATA-type
PROSITE patternPS003440179204IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAPMYLNPAQ DHSDPFRLAE AQKRDHQRLQ VLHSSSHNRP AASVSRPIFL NSSTQDQGMI  60
KLEGSQQHDQ KRIAGGGSSD LQSSMSQPKT MTNKLAIRRR EVGEGSTSDN SSYTSSSSGE  120
SMSSKMRLAN KIINSSSVST GTHDESVKVA EKLLHEHDNI EVHYFTTNSS NSNNTVRICS  180
DCNTTTTPLW RSGPRGPKSL CNACGIRQRK ARKAMQAAAE SGTTTAKDNS SFSKIKLQNN  240
MEKKPRTSHV AQYKKVQCNT PDPDPPHHEY RSQRKLCFKD FALSLSSNSA LKQVFPRDVE  300
EAAILLMELS CGFSHT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475928.10.0putative GATA transcription factor 22 isoform X2
TrEMBLA0A067GN400.0A0A067GN40_CITSI; Uncharacterized protein
TrEMBLV4UNS50.0V4UNS5_9ROSI; Uncharacterized protein
STRINGXP_006475927.10.0(Citrus sinensis)
STRINGXP_006450837.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-16cytokinin-responsive gata factor 1