PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021045m
Common NameCISIN_1g017142mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 319aa    MW: 36691.9 Da    PI: 5.2819
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021045mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.29.9e-3451333128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        +GfrF Ptde+++     k+ +   +++ ++ike+d+y++ePw+Lp  +++++ee+ wyfF++   k+a++kr +r tk+gyWk+tg+  ++
  orange1.1g021045m   5 VGFRFYPTDEQIILLLTMKRRDPAGFSV-RTIKEIDLYSFEPWELPchSEIQSEEEVWYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNI 95 
                        7************544444444445777.78***************6448888999************************************ PP

                NAM  93 lsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                        ++k k+e++g+kk+L f +   a +  kt+Wv+he ++
  orange1.1g021045m  96 KRKyKTEVIGTKKILSFSRDdAAAEKDKTEWVIHEIAV 133
                        *9988999**********764677889********875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.1773151IPR003441NAC domain
SuperFamilySSF1019419.42E-374151IPR003441NAC domain
PfamPF023651.1E-165131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDSLVGFRFY PTDEQIILLL TMKRRDPAGF SVRTIKEIDL YSFEPWELPC HSEIQSEEEV  60
WYFFCEPCYK NAESKRVRRR TKEGYWKKTG RGSNIKRKYK TEVIGTKKIL SFSRDDAAAE  120
KDKTEWVIHE IAVENSPDFE KDFVVCRLER KREKKTLGVV STKRKREKKT LGVVSTKRKR  180
EKKLGVSTSD EKIVEDSVQA ETRRLAELNR RGDGYDARND ASVWALQSSD YPEQESSDYN  240
GSSCGSGLLN SQLDGEQVVG QFNSRRDFQT EYSPEETGET TPGFFTSKSD EGVYMEGCSD  300
ANTGTESFIE WIDVLFDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-20615220166NO APICAL MERISTEM PROTEIN
1ut4_B9e-20615220166NO APICAL MERISTEM PROTEIN
1ut7_A9e-20615220166NO APICAL MERISTEM PROTEIN
1ut7_B9e-20615220166NO APICAL MERISTEM PROTEIN
4dul_A9e-20615220166NAC domain-containing protein 19
4dul_B9e-20615220166NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162182KRKREKKTLGVVSTKRKREKK
2163179RKREKKTLGVVSTKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024041043.10.0NAC domain-containing protein 71-like
TrEMBLA0A067DKM00.0A0A067DKM0_CITSI; Uncharacterized protein
STRINGXP_006485380.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.11e-27NTM1-like 8