PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g020831m | ||||||||
Common Name | CISIN_1g020831mg, LOC102626219 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 322aa MW: 35896.2 Da PI: 7.6194 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.1 | 1.2e-30 | 156 | 215 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rsaedp++++ tYegeHnh+ orange1.1g020831m 156 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSAEDPSILVATYEGEHNHP 215 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.8E-30 | 150 | 217 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.669 | 151 | 217 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.93E-26 | 154 | 217 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-35 | 156 | 216 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.8E-25 | 157 | 215 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0002238 | Biological Process | response to molecule of fungal origin | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009623 | Biological Process | response to parasitic fungus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MDSTWVDTSL DLNLNLLNHS SEVPKREFKG DHFAEFEERA SVKQETGILV EELNRISTEN 60 KKLNEMLSIL CKNYNNLRQQ YMDLMNKNTE NEVGISKKRK AESEDHCHTI GFNVHATESS 120 TSTDEESCKR PKDNNTKAKV SRFYVRASDS NSTLIVKDGY QWRKYGQKVT RDNPSPRAYF 180 KCSFAPSCPV KKKVQRSAED PSILVATYEG EHNHPQPTDS KAELSLSPSH VATIGNPIHV 240 SAASSMLSAS PTATLDMIQP GFLFDDAKKS SVQQIEAPAI HQILVQQMAS NLTKDPNFTA 300 ALAAAISGRF ADQARTQRWS L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-21 | 155 | 217 | 13 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.3173 | 0.0 | fruit| leaf |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY681120 | 1e-130 | AY681120.1 Citrus limon putative WRKY transcription factor 40 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006450293.1 | 0.0 | probable WRKY transcription factor 40 | ||||
Refseq | XP_006483469.1 | 0.0 | probable WRKY transcription factor 40 | ||||
TrEMBL | A0A067FW74 | 0.0 | A0A067FW74_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NW28 | 0.0 | A0A2H5NW28_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TSJ2 | 0.0 | V4TSJ2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006483469.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006450293.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2477 | 28 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 6e-87 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g020831m |
Entrez Gene | 102626219 |