PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g020455m | ||||||||
Common Name | CISIN_1g017497mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 327aa MW: 37022.6 Da PI: 7.7041 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.6 | 1.1e-08 | 193 | 240 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++ Lq orange1.1g020455m 193 SHSLAERVRREKISERMKILQKLVPGC----DKVTGKAFMLDEIINYVQFLQ 240 8*************************9....555****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-17 | 187 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.62E-9 | 187 | 244 | No hit | No description |
PROSITE profile | PS50888 | 15.447 | 189 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.8E-17 | 189 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-6 | 193 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-9 | 195 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MAAFSYQQHH HPFLLDSSEF IEEGSFFSQL YYPPKFPTHD DHQEMIVVNN NSNNLLDAAA 60 VFETSCGDNH DHHSDDNCNE PSNNNSLATK NQSTAVSSTE QQVTQSTVTT TATTTRMDKK 120 RKNRTNASSS FNSAQSKDPR EVKSKKQKKG NVNDAKKEEK ENSPKADSEQ KVAKEPPKDY 180 IHVRARRGQA TDSHSLAERV RREKISERMK ILQKLVPGCD KVTGKAFMLD EIINYVQFLQ 240 NQVEFLSMKL ASVNPMFYDF GMDLDNTFMV RPDDQQLQHL KCNAAPQPSS QLLLTQPLPL 300 PQLIIAITIL FLILHFYFNK GRGQMP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.7288 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU240878 | 0.0 | EU240878.1 Citrus sinensis cultivar Moro Nucellare 58-8D-1 putative bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436929.1 | 0.0 | transcription factor bHLH137 | ||||
TrEMBL | A0A067DZK8 | 0.0 | A0A067DZK8_CITSI; Uncharacterized protein | ||||
STRING | XP_006436929.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 7e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g020455m |