PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020389m
Common NameCISIN_1g020389mg, LOC102627121
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 328aa    MW: 35524.9 Da    PI: 8.7625
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020389mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.9e-1266110147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  orange1.1g020389m  66 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 110
                        789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.83E-1660116IPR009057Homeodomain-like
PROSITE profilePS5129413.75861115IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-664116IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-1864113IPR006447Myb domain, plants
SMARTSM007179.6E-1065113IPR001005SANT/Myb domain
PfamPF002496.4E-1066110IPR001005SANT/Myb domain
CDDcd001671.40E-768111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MVSKIPNPAE GFYLDPNGMA LPGLGPFASS ATTPTAAAAA AGTSTVSTSE DPSKKIRKPY  60
TITKSRESWT EPEHDKFLEA LQLFDRDWKK IEAFIGSKTV IQIRSHAQKY FLKVQKNGTA  120
EHLPPPRPKR KAAHPYPQKA SKNAPMLSQV SGSFQSSSAQ LEPGHFLRPD SSSMLMIPMA  180
SAATSWTNNV QTVSLSPASK GPEVANNRSN STDSTPKARV SGELTDQGGE LTDQGNNSHP  240
LRVLPDFAQV YTFIGSVFDP NASDHVQKLK KMDPIDVETV LLLMRNLSIN LTSPDFEDHR  300
RLLSSYEIDP ETANHSGTNN LLLGGGQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.79410.0flower
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422040.10.0protein REVEILLE 6
RefseqXP_006490627.10.0protein REVEILLE 6 isoform X1
SwissprotQ8H0W31e-138RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A067F0T30.0A0A067F0T3_CITSI; Uncharacterized protein
TrEMBLV4S8W80.0V4S8W8_9ROSI; Uncharacterized protein
STRINGXP_006490627.10.0(Citrus sinensis)
STRINGXP_006422040.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-116MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]