PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g020348m | ||||||||
Common Name | CISIN_1g020124mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 328aa MW: 35685.8 Da PI: 6.6076 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.8 | 5.7e-34 | 49 | 103 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl orange1.1g020348m 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.485 | 46 | 106 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-32 | 48 | 104 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.42E-18 | 48 | 103 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-25 | 49 | 104 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-9 | 51 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.8E-23 | 132 | 178 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 328 aa Download sequence Send to blast |
MYQPNSVPSS SLVRSNSLVH GQHLDCGSSQ MDPMNGGNSL NNNPSLASKQ RLRWTHELHE 60 RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDVDKKETG 120 DMLSSLDGSS GMQITEALKL QMEVQKRLHE QLEVQRQLQL RIEAQGKYLK KIIEEQQRLS 180 GVLTEAPGSG GSAPASGDNC QEPDKKTDPA TPAPTSESPL QDKAAKEHVP AKSLSLDESF 240 SSQNEPLTPD SGCNVSSPSQ SPKGERSMKK QRVDMETAYA KPEMVLTHPI LESSISSSYQ 300 QPQNVFDPSS RASVGKEDRP EVSGNDL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 9e-24 | 49 | 106 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-24 | 49 | 106 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-24 | 49 | 106 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-24 | 49 | 106 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Csi.3882 | 0.0 | flower| fruit| root |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006467244.1 | 0.0 | myb family transcription factor PHL7 isoform X2 | ||||
Swissprot | Q9SJW0 | 1e-134 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A067GG56 | 0.0 | A0A067GG56_CITSI; Uncharacterized protein | ||||
STRING | XP_006467243.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-104 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g020348m |