PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020338m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 328aa    MW: 36459.9 Da    PI: 7.5852
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020338mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.65.8e-15245270126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +ktelC+ +++tG C+yGd C+FaHg
  orange1.1g020338m 245 FKTELCNKWQETGACPYGDHCQFAHG 270
                        79***********************8 PP
2zf-CCCH18.63.3e-06283307125
                        --S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                        ykte Cr  +++  C+yG rC+F H
  orange1.1g020338m 283 YKTEVCRMVLAGDVCPYGHRCHFRH 307
                        9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.2E-19239277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-11241276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286244272IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-9244271IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-12245270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8278313IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-12278311IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4282309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821282310IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MQQMQNDGVS ANPYSNHGVA SSKSQDDENA DAFASLYSSL VMAQPETTLS HNPYNDPTIH  60
DSLYYSRLLI RQQQQQQHQD MINRHNLCLT RLREAAREAE ALRQENDSLR TVNRELNKHV  120
SLLIKSSVNE QLSCGNNDAA TSFGVVNGMR GLSIAGGGEE VSAESPTSVM ENVDVKRVSL  180
PKSISVRSNG YLKMGQPAAA AAAAAASKTR PRTPAPLRPT QKVYVKGGQQ EEEPLELEVY  240
NQGMFKTELC NKWQETGACP YGDHCQFAHG IEELRPVIRH PRYKTEVCRM VLAGDVCPYG  300
HRCHFRHALT EQERFMGHLN PRSIKLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-22245311470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006469094.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F54e-88C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLV4W6660.0V4W666_9ROSI; Uncharacterized protein
STRINGXP_006469094.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-67C3H family protein