PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g020291m | ||||||||
Common Name | CISIN_1g020291mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 329aa MW: 36807.7 Da PI: 6.3178 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 76.3 | 3.6e-24 | 141 | 201 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++ +++fpr+Y+rCt++ gC++ k+v+r +e+p + +tY g+H+++ orange1.1g020291m 141 DDGHAWRKYGQKVILNARFPRNYFRCTHKfdqGCQASKQVQRIQEEPPLHRTTYYGRHTCK 201 8***************************9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.7E-25 | 130 | 201 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-24 | 134 | 201 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.254 | 135 | 198 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.9E-36 | 140 | 202 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-23 | 141 | 201 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MKMEAGQATS SSSWLENSSD RRRAIEELIK GQEMALQLRN LIHTSTKKGE GSKAMIINQD 60 LVANILSSFT NSLSILKNGD SDEASQVQEH TQLSSPCWEA YLKTEDSGES SKSSTVKDRR 120 GCYKRRKCAE SWTEHSSTLT DDGHAWRKYG QKVILNARFP RNYFRCTHKF DQGCQASKQV 180 QRIQEEPPLH RTTYYGRHTC KSLIKSSQLM LDSTTSDQCP MISFGSAHIT EKDFNPFLSS 240 FPSIKQESNK DDQGPLSDMT HNQSSSSDEY LVSHDFPAFE SNEHMKVLSS DHGDVISGVN 300 SSCTASAHSL DLAVDMSVNF DDVLEFNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 8e-21 | 141 | 201 | 9 | 69 | OsWRKY45 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.13502 | 0.0 | leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU173833 | 0.0 | KU173833.1 Citrus grandis cultivar Shatinyu Hort WRKY transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006429596.2 | 0.0 | probable WRKY transcription factor 70 | ||||
Refseq | XP_006481203.1 | 0.0 | probable WRKY transcription factor 70 | ||||
TrEMBL | A0A067FLP8 | 0.0 | A0A067FLP8_CITSI; Uncharacterized protein | ||||
STRING | XP_006481203.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006429596.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16719 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 3e-42 | WRKY DNA-binding protein 70 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g020291m |