PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020106m
Common NameCISIN_1g020106mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 332aa    MW: 37442.4 Da    PI: 9.6738
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020106mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-182267147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
  orange1.1g020106m 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 67
                       899*****************************.***********996 PP
2Myb_DNA-binding58.51.5e-1874117146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        r ++T++E+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  orange1.1g020106m  74 RRPFTEDEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 117
                        679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.2221768IPR017930Myb domain
SuperFamilySSF466892.32E-2921115IPR009057Homeodomain-like
SMARTSM007178.4E-152170IPR001005SANT/Myb domain
PfamPF002493.5E-172267IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-272375IPR009057Homeodomain-like
CDDcd001672.20E-142566No hitNo description
PROSITE profilePS5129427.77669123IPR017930Myb domain
SMARTSM007179.6E-1673121IPR001005SANT/Myb domain
PfamPF002492.2E-1574116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2176122IPR009057Homeodomain-like
CDDcd001671.05E-1276116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEDSGAGSSD DATKSSTSTC PRGHWRPAED EKLRQLVEQY GAQNWNSIAE KLQGRSGKSC  60
RLRWFNQLDP RINRRPFTED EEERLLAAHR IHGNKWALIA RLFPGRTDNA VKNHWHVIMA  120
RKQREQSKLC GKRSHQDTGN IISDQNFIHA RRSRSQDAML SSKFGFDQNS RIFEFRNPNH  180
DRTFAVSPPP SSSLTWAFGA APIVTSSNNS SVDLSRREAG DFFNTSTKVS DQHPYRSCYP  240
NSSAYGSYRG SSSFGVTNYR RFVPSPFGYV KVGDDYESHG VIKKEVIKFS DNSPSHLNLR  300
LSTQQAQADD QSIKHHEEVP FIDFLGVGIA S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-32221227107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5270823e-86HQ527082.1 Gossypium herbaceum clone NBRI_B_1735 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434346.10.0transcription factor MYB115
TrEMBLA0A067H7L10.0A0A067H7L1_CITSI; Uncharacterized protein
STRINGXP_006434346.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16592913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.18e-67myb domain protein 52