PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g019919m
Common NameCISIN_1g019919mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 335aa    MW: 36726.7 Da    PI: 6.1043
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g019919mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA529.3e-17229263135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  orange1.1g019919m 229 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 263
                        99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.3E-8119313IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.174223259IPR000679Zinc finger, GATA-type
SMARTSM004014.6E-16223273IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.75E-14227287No hitNo description
Gene3DG3DSA:3.30.50.101.3E-13227261IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.28E-13228275No hitNo description
PfamPF003201.2E-14229263IPR000679Zinc finger, GATA-type
PROSITE patternPS003440229254IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
METPEFYIGG YFNAASTNNF SSEKRVVVAA DQKPGENFNF TVEDLLDFSN DDAIMNDGGF  60
FENVAANSTD SSTVTSNSAV SGGENNFPAN FSGCRSSNSF ADSQFCGELC VPYDDLAELE  120
WLSNFVEDSF SMDQTLQKSD LEFLSGSKSL TPESSSSSTR LEPVSPKASN PVFLPETPLP  180
GKARSKRPRA APCDWSTRLL HVSPKGPSVE RESPNPLMHT ESGDSVRKCL HCASEKTPQW  240
RTGPMGPKTL CNACGVRYKS GRLVPEYRPA ASPTFVSAKH SNSHRKVMEL RRQKEMQRAP  300
QQQFLGQRSI FGVSNGADDY LIHHPSGPDF RHMI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024036448.10.0GATA transcription factor 12
SwissprotP697811e-79GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A067ED160.0A0A067ED16_CITSI; GATA transcription factor
STRINGXP_006465677.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-73GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]