PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g019546m
Common NameCISIN_1g019546mg, LOC102610198
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 340aa    MW: 38202.2 Da    PI: 4.5296
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g019546mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-1878128155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        ++y+GVr++  +g+WvAeIr+p   + r  r +lg+f +a eAa a+++a+++++g
  orange1.1g019546m  78 CDYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGTFPSAVEAALAYDHAARAMYG 128
                        68*****999.**********8...2.359***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.07E-2878138No hitNo description
PfamPF008474.8E-1278128IPR001471AP2/ERF domain
PROSITE profilePS5103220.92979136IPR001471AP2/ERF domain
SMARTSM003803.7E-3379142IPR001471AP2/ERF domain
PRINTSPR003675.1E-98091IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-2080137IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.8E-3080137IPR001471AP2/ERF domain
PRINTSPR003675.1E-9102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAIQSKDSSP SLMMPLSSDR KRKRRDGVNV AETLERWRRY NESLESGNGE DKPMRRVPAK  60
GSKKGCMKGK GGPENGRCDY RGVRQRTWGK WVAEIREPNR GNRLWLGTFP SAVEAALAYD  120
HAARAMYGPC ARLNLPDVSR LNESSKDSDS TTSSNQSEIE DAKVKNDARE AESKIIAQPE  180
AELLSSPVKP KAKDEAEDNE KYYWGEQLDC KPEARDEPIL GSICDVKPET GDERKDATGI  240
DWLEGYDWSK DEMFDVNDLL DLLDNNPLCG SEQQSELSYY NLQAGSLDQS QFGYEKPLDP  300
FFQLRNPDME LPVGVNYAEH GASDYGLQFL KEEESDFGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1580136360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11924RKRKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435820.10.0dehydration-responsive element-binding protein 2A
RefseqXP_006486246.10.0dehydration-responsive element-binding protein 2A
TrEMBLA0A067FRR30.0A0A067FRR3_CITSI; Uncharacterized protein
TrEMBLA0A2H5NKB10.0A0A2H5NKB1_CITUN; Uncharacterized protein
TrEMBLV4TBW40.0V4TBW4_9ROSI; Uncharacterized protein
STRINGXP_006486246.10.0(Citrus sinensis)
STRINGXP_006435820.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.23e-42DRE-binding protein 2A