PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g019375m | ||||||||
Common Name | CISIN_1g019375mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 343aa MW: 38277.1 Da PI: 7.1479 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104 | 7.9e-33 | 194 | 251 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp+vv++tYeg+Hnh+ orange1.1g019375m 194 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTVVITTYEGQHNHQ 251 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-34 | 178 | 253 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-29 | 186 | 253 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.397 | 188 | 253 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.7E-38 | 193 | 252 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-25 | 194 | 251 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MSNNEKKSSY HFYDPFDCNP HGFNRLGFNF FQDNNPSMYM NPPTPAVENL QAAAFDPTSP 60 YVSFTDCLHG NSMDYTSLSR AFDISCSSSE IITPPVDDTP KKTTAFAGDS AGATENNNNP 120 STPNSSVSSS SNEAGADEDS GNHSNKKDKQ QVKGQEDGDD DEKSKNKVNK PKKEKKQREP 180 RFAFLTKSEI DHLEDGYRWR KYGQKAVKNS PYPRSYYRCT SQKCTVKKRV ERSYQDPTVV 240 ITTYEGQHNH QCPATLRGNA AGMLSPSLLA SASMRPTFPQ EFLLSQFLPS ANNNQGVNIP 300 SSMYYQNLNI SPQQQQQQLG NQVPDYGLLQ DLVPSFINRQ QP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-28 | 186 | 254 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-28 | 186 | 254 | 10 | 78 | Probable WRKY transcription factor 4 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.17606 | 0.0 | fruit |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00440 | DAP | Transfer from AT4G18170 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006484858.1 | 0.0 | probable WRKY transcription factor 28 | ||||
TrEMBL | A0A067F4B5 | 0.0 | A0A067F4B5_CITSI; Uncharacterized protein | ||||
STRING | XP_006484858.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1524 | 26 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 1e-56 | WRKY DNA-binding protein 28 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g019375m |