PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g019126m | ||||||||
Common Name | CISIN_1g019126mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 347aa MW: 37763.6 Da PI: 6.794 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.4 | 1.9e-30 | 163 | 221 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp ++++tY+ eHnh+ orange1.1g019126m 163 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPGMFIVTYTAEHNHP 221 79*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-30 | 154 | 223 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.888 | 157 | 223 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-26 | 160 | 223 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-36 | 162 | 222 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-25 | 164 | 221 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MEVDWDLHAV VRGCNSSVNA TVTTTTATTT STTTSFKDDL DTTKIQSWFS VSPFSREQTS 60 GHLFTLADPF EARNAIEELH ELYKPFFPKS PQPISPKSSQ PISSSISSIT SSSSKEQTQF 120 KQQQPNNKQS HASSVTSSTT PRTKRRKNQL KRVCHVPAEG LSSDVWAWRK YGQKPIKGSP 180 YPRGYYRCSS SKGCLARKQV ERNRSDPGMF IVTYTAEHNH PAPTHRNSLA GSTRQKPFTP 240 QTVTSSDSNK PSSPTSSTKP TFSSLSPATS MEEDTVPQST NTESREIDLL EDEEEVELAV 300 SDVGISDDFF VGLEGLGSEE SLPDHFQASF GLPLAANSAA TAAGGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-22 | 149 | 224 | 4 | 80 | Disease resistance protein RRS1 |
5w3x_D | 4e-22 | 149 | 224 | 4 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.1850 | 0.0 | fruit |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF708979 | 9e-93 | JF708979.1 Dimocarpus longan WRKY transcription factor 23-2 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006444950.1 | 0.0 | WRKY transcription factor 22 | ||||
Refseq | XP_006491188.1 | 0.0 | WRKY transcription factor 22 | ||||
TrEMBL | A0A067H396 | 0.0 | A0A067H396_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PGE0 | 0.0 | A0A2H5PGE0_CITUN; Uncharacterized protein | ||||
STRING | XP_006491188.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006444950.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7810 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 1e-58 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g019126m |