PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g019055m
Common NameCISIN_1g011928mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 347aa    MW: 39615.8 Da    PI: 5.8545
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g019055mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.34.7e-122692196
                       HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3 21 kfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                       +f++ ++  ++ ++  ++e+esg+++++++     s+r+ l++GWk F +an+L egD++vF+l++ ++f  +  +
  orange1.1g019055m  2 RFCKFNM--PKIDTVFIVENESGEEYKINY----ISQRTALSGGWKAFSDANQLYEGDVLVFHLVEPTRF--KAYI 69
                       6786665..336678999************....566778***********************9876666..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.337173IPR003340B3 DNA binding domain
CDDcd100171.29E-12271No hitNo description
Gene3DG3DSA:2.40.330.106.8E-12273IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-9269IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-14274IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.6E-4373IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MRFCKFNMPK IDTVFIVENE SGEEYKINYI SQRTALSGGW KAFSDANQLY EGDVLVFHLV  60
EPTRFKAYIV RANGFGNVNA DAKPLNSVPM DDELEVAPKD HSEKRVKKNK RAKRVKPPPG  120
FHRDNNQSNS LMLLETNNGH VEDQFNNDTE DLGPNKVLPH SESSNFKEMK SIDDFTILVD  180
GLAIDHELSD QHRSKYYDLC CSQNSFLHDH LLKSINCKLA AEIITQTVNI AEAIRACNLS  240
TSRADYEIWD KTLKGFELLG MNVGFLRARL NRLMSLAFES EESEVSKRLR EVSAEQARAE  300
EEMRSLELKL LRLKETMGRL DSELESLKVK AEKHELKFQE EANAPW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.13810.0callus| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487085.10.0B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A067DHX00.0A0A067DHX0_CITSI; Uncharacterized protein
TrEMBLA0A067DLM00.0A0A067DLM0_CITSI; Uncharacterized protein
STRINGXP_006487085.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-20B3 family protein