PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g018950m

Common Name

CISIN_1g018950mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 349aa MW: 39363.1 Da PI: 6.6749

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g018950m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.9	8e-57	12	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+++yL++kv + +++ ++i evd++k+ePwdLp+++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+ orange1.1g018950m 12 LPPGFRFHPTDEELITHYLTPKVFDGCFSA-RAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEI 102 79***********************999.89***********99999*********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ ++lvg+kktLvfykgrapkg+kt+Wvmheyrle orange1.1g018950m 103 YK-AKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLE 138 .999*****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-64	8	162	IPR003441	NAC domain
PROSITE profile	PS51005	59.801	12	162	IPR003441	NAC domain
Pfam	PF02365	3.8E-30	13	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MEKYDDQEQI ELPPGFRFHP TDEELITHYL TPKVFDGCFS ARAIGEVDLN KCEPWDLPRR 60 AKMGEKEWYF FCVRDRKYPT GLRTNRATEA GYWKATGKDK EIYKAKALVG MKKTLVFYKG 120 RAPKGQKTNW VMHEYRLEGK YSAYDHPKTA KNEWVICRVF QKSGGGKKTH IQGMVKLGSF 180 GNGIGSSALP PLMDSSPYNS ETRTTINETS HVTCFSDALE DQKAQEDMID SFNNSLLASS 240 SSSNPHSEIS PASIFFSKSS FSNSLYADQI LPRIANMQYP DSFLMQDQSI LKMLLENHGP 300 STKKNSKAEF SQDESVVSNH EFIQGSFDDH EDPSSSAGPV ALDCLWNY*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MEKYDDQEQI ELPPGFRFHP TDEELITHYL TPKVFDGCFS ARAIGEVDLN KCEPWDLPRR  60
AKMGEKEWYF FCVRDRKYPT GLRTNRATEA GYWKATGKDK EIYKAKALVG MKKTLVFYKG  120
RAPKGQKTNW VMHEYRLEGK YSAYDHPKTA KNEWVICRVF QKSGGGKKTH IQGMVKLGSF  180
GNGIGSSALP PLMDSSPYNS ETRTTINETS HVTCFSDALE DQKAQEDMID SFNNSLLASS  240
SSSNPHSEIS PASIFFSKSS FSNSLYADQI LPRIANMQYP DSFLMQDQSI LKMLLENHGP  300
STKKNSKAEF SQDESVVSNH EFIQGSFDDH EDPSSSAGPV ALDCLWNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	1	168	6	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	1	168	6	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	1	168	6	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	1	168	6	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	1	168	9	174	NAC domain-containing protein 19
3swm_B	2e-55	1	168	9	174	NAC domain-containing protein 19
3swm_C	2e-55	1	168	9	174	NAC domain-containing protein 19
3swm_D	2e-55	1	168	9	174	NAC domain-containing protein 19
3swp_A	2e-55	1	168	9	174	NAC domain-containing protein 19
3swp_B	2e-55	1	168	9	174	NAC domain-containing protein 19
3swp_C	2e-55	1	168	9	174	NAC domain-containing protein 19
3swp_D	2e-55	1	168	9	174	NAC domain-containing protein 19
4dul_A	2e-55	1	168	6	171	NAC domain-containing protein 19
4dul_B	2e-55	1	168	6	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ619349	0.0	FJ619349.1 Poncirus trifoliata NAC domain protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006482627.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-133	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A067FZ06	0.0	A0A067FZ06_CITSI; Uncharacterized protein
STRING	XP_006482627.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-131	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	orange1.1g018950m

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]