PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018549m
Common NameCISIN_1g018549mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family RAV
Protein Properties Length: 355aa    MW: 40560.8 Da    PI: 6.7257
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018549mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.73.7e-104391155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       s++kGV    ++g W A+I+       + +r++lg+f ++++Aa a++ a+ +l+g
  orange1.1g018549m 43 SKFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKDAAMAYDSAAIRLRG 91
                       799***6.666899****999......44**********99*************97 PP
2B389.52.7e-28166262185
                        EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                        f+k+ltpsdv+k++rlv+pkk+a ++            +++k+ +++l++ d+s + W+++++y+k+s+++v+t+GW++Fvk+n+Lk++D++
  orange1.1g018549m 166 FQKELTPSDVGKLNRLVIPKKYAVKYfpqiserveehaENDKADDVQLVFHDKSMKLWKFRYCYWKSSQSFVFTRGWNRFVKENQLKANDTI 257
                        99********************************999988899************************************************* PP

                        EEEE- CS
                 B3  81 vFkld 85 
                         F+l 
  orange1.1g018549m 258 CFYLC 262
                        ***75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.5E-54391IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-1543100IPR016177DNA-binding domain
CDDcd000186.12E-2443101No hitNo description
PROSITE profilePS5103217.4114499IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-174499IPR001471AP2/ERF domain
SMARTSM003801.8E-2044105IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.6E-33163285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-27165263IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-25165261No hitNo description
PROSITE profilePS5086313.394166280IPR003340B3 DNA binding domain
SMARTSM010192.8E-22166280IPR003340B3 DNA binding domain
PfamPF023623.5E-26166271IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEEEMLSIIS NGETNVIPEL SDSISSTPLI PATKRLRHAS AVSKFKGVVP QQNGHWGAQI  60
YANHQRIWLG TFKSEKDAAM AYDSAAIRLR GVDSHRNFPW TKITIEEPNF QSHYSTEAVI  120
NMIRDGSYSS RFADFLRSHS RTLEEDVIFT QMRAGTDGWM MCRQLFQKEL TPSDVGKLNR  180
LVIPKKYAVK YFPQISERVE EHAENDKADD VQLVFHDKSM KLWKFRYCYW KSSQSFVFTR  240
GWNRFVKENQ LKANDTICFY LCELRDIAKG TKTFGMIDAK KGENSGASAE VSGPYVDMKV  300
DLQLQLGQNK KENKVEEDDN GNEIEATEEV ELKAPSSTSD SERKLFKLFG VEIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2716525913100DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.172850.0callus
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024953690.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_024953691.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_024953692.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6881e-103RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A067F8910.0A0A067F891_CITSI; Uncharacterized protein
STRINGXP_006473975.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15647617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-106RAV family protein