PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018206m
Common NameCISIN_1g0182382mg, LOC102617411
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 360aa    MW: 40821.3 Da    PI: 7.5777
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018206mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.98.2e-1277113440
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                        +k +rr+++NReAAr+sR+RKka++++Le+   +L +
  orange1.1g018206m  77 DKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQ 113
                        689**************************86555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-774134IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.65776118IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.96E-778116No hitNo description
PfamPF001702.4E-878116IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-779121No hitNo description
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
PfamPF141443.5E-31161236IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MNSPSTQYVT PRRLGIYEPI HQMSTWVENF KSNGNPNTSA PIIVEVDTRL DNQSEDTSHG  60
SQGPFCKYEQ EASKPFDKIQ RRLAQNREAA RKSRLRKKAY VQQLETSRLK LVQLEQELDR  120
ARQQGLYVGS GVEGVHMGFS GTVNSAFEME YGHWLEEQSR QICELRNALQ AHIGDVELRI  180
LVDAGMSHYF ELFRMKTTAA KADVFYVMSG MWKTPAERFF FWIGGFRPSE LLKVLVPQLE  240
PLTEQQLIDV CNLRQSCQQA EDALSQGMDK LQQTLAETVA AGQLAEVGYN PRTGTAMDKL  300
EALVSFVSQA DHLRQETLQQ MSRILTTRQA ARGLLALGEY FLRLRALSSL WANRPREPT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.172290.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428095.10.0transcription factor TGA1
RefseqXP_006428096.10.0transcription factor TGA1
RefseqXP_006464304.10.0transcription factor TGA1
RefseqXP_006464305.10.0transcription factor TGA1
RefseqXP_006464306.10.0transcription factor TGA1
RefseqXP_015386345.10.0transcription factor TGA1
RefseqXP_015386392.10.0transcription factor TGA1
RefseqXP_024037154.10.0transcription factor TGA1
SwissprotQ392370.0TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A067DQT60.0A0A067DQT6_CITSI; Uncharacterized protein
TrEMBLV4SVZ70.0V4SVZ7_9ROSI; Uncharacterized protein
STRINGXP_006464304.10.0(Citrus sinensis)
STRINGXP_006428094.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.50.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]