PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018006m
Common NameCISIN_1g015635mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 363aa    MW: 41541 Da    PI: 4.897
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018006mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind71.91.2e-2236432102
                        -HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
       HSF_DNA-bind  32 deeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                        d ++fa+++LpkyFkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+ e l++i+r+k 
  orange1.1g018006m   3 DGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEDFVRGQPERLKNIHRRKP 64 
                        6799******************************9998.........*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.6E-25162IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.0E-22362IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.13E-19362IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.7E-19362IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-101123IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043401236IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-102436IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDDGQDFARD LLPKYFKHNN FSSFIRQLNT YGFRKVDPEQ WEFANEDFVR GQPERLKNIH  60
RRKPVHSHSN QNLHGQGTPL TESERQGLKD DIERLKKEKE ILLLELQRHE QERQGFESQM  120
QLLRERFQLM EQRQQKMVSF VGRALQKPGL ESNFGAHLEN HDRKRRLPRI DYFYDEANIE  180
DNPMGTSQIV AGADSADISS SNMEKFEQLE SSMTFWENIV QDVGQSCFQP NSSLELDEST  240
SCADSPAISC IQLNVDARPK SPGIDMNSEP AVTAATEPVP SKEPETATTI PLQAGVNDVF  300
WEQFLTENPG SSDAQEVQSE RKECDGKKNE NKPADHGKFW WNMRNVNSLA EQMGHLTPAE  360
RT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-1316249120Heat shock factor protein 1
5d5u_B3e-1316258129Heat shock factor protein 1
5d5v_B3e-1316258129Heat shock factor protein 1
5d5v_D3e-1316258129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166DRKRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.24320.0flower| fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467597.10.0heat stress transcription factor A-4a
RefseqXP_006467598.10.0heat stress transcription factor A-4a
RefseqXP_015382489.10.0heat stress transcription factor A-4a
SwissprotO494031e-118HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A067GRG90.0A0A067GRG9_CITSI; Uncharacterized protein
STRINGXP_006467594.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-107heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]