PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017930m
Common NameCISIN_1g017930mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 364aa    MW: 40160 Da    PI: 9.5893
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017930mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY992.9e-31292349359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  orange1.1g017930m 292 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGEHNHS 349
                        99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.9E-15240288IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.8E-32279349IPR003657WRKY domain
PROSITE profilePS5081130.458285351IPR003657WRKY domain
SuperFamilySSF1182909.68E-27288349IPR003657WRKY domain
SMARTSM007742.1E-38290350IPR003657WRKY domain
PfamPF031067.2E-27292348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAVELMMEYG NTSHFTDKVE DCAVQEAASG LESVEKLINL LSQQQQVQQN NSHQSSPSSR  60
SSMDLENDCK AVADVAVSKF KRVISLLGRN RIGHARFRRA PVAAPCVDYQ QNQEKDKNLQ  120
QRQQQEVEVV PETKVYYARP IQQIPPLPPP PRNYHQHEFS TLVVPKNGVD LERKDSATTI  180
NFSNYTSAGN SFLSSLTVTG DNDNKQQPSS SSASATFHFT NLSQQVSSAG KPPLSSSSLK  240
RKCSSASDNL ASAKSCGVSS GRCHCTKKRK SRVKRVVRVP AVSLRLSDIP PDDFSWRKYG  300
QKPIKGSPHP RGYYKCSSVR GCPARKHVER ALDDPSMLVV TYEGEHNHSL SVADTRNLIL  360
ESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-212883501576Probable WRKY transcription factor 4
2lex_A7e-212883501576Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.30590.0flower| vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425967.10.0probable WRKY transcription factor 15
SwissprotQ9STX01e-90WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A067GUV30.0A0A067GUV3_CITSI; Uncharacterized protein
TrEMBLV4SF700.0V4SF70_9ROSI; Uncharacterized protein
STRINGXP_006425967.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.15e-67WRKY DNA-binding protein 15