PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017827m
Common NameCISIN_1g017827mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 366aa    MW: 40902.3 Da    PI: 8.0559
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017827mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1761.1e-54161411128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+++yL kkv +  +++ ++i +vd++k ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat sgyWkatgkdke+
  orange1.1g017827m  16 LPPGFRFHPTDEELITHYLYKKVLDVCFSC-RAIGDVDLNKNEPWELPWKAKMGEKEWYFFCMRDRKYPTGLRTNRATVSGYWKATGKDKEI 106
                        79***************************9.89***************888999************************************** PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++ +++lvg+kktLvfy+grapkgek++Wvmheyrl
  orange1.1g017827m 107 YR-GKSLVGMKKTLVFYRGRAPKGEKSSWVMHEYRL 141
                        **.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-6312166IPR003441NAC domain
PROSITE profilePS5100558.43216166IPR003441NAC domain
PfamPF023655.4E-2917141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MENVSAVGKE DDQMDLPPGF RFHPTDEELI THYLYKKVLD VCFSCRAIGD VDLNKNEPWE  60
LPWKAKMGEK EWYFFCMRDR KYPTGLRTNR ATVSGYWKAT GKDKEIYRGK SLVGMKKTLV  120
FYRGRAPKGE KSSWVMHEYR LDGKFSVHSL PKTAKNEWVL CRVFQKGSGG KRTHISGLAG  180
LGSFGNELGP PGLPPLMDSS PDNGSKTIKS VADSAYVSCF SNSIDLQRNQ KTTTTIENFF  240
NNPPPISVSS NCPDVFPRIP LSSNSFYSPL SVPVPSHAQF PGSVFMQDHS ILRALIENQG  300
SNMSQSFKTE REMISVSQDT GLTADMNPEI SSVVSNLEMV KRPFNDHDAP STSAGPVDFD  360
CFWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-531317217174NAC domain-containing protein 19
3swm_B3e-531317217174NAC domain-containing protein 19
3swm_C3e-531317217174NAC domain-containing protein 19
3swm_D3e-531317217174NAC domain-containing protein 19
3swp_A3e-531317217174NAC domain-containing protein 19
3swp_B3e-531317217174NAC domain-containing protein 19
3swp_C3e-531317217174NAC domain-containing protein 19
3swp_D3e-531317217174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440624.10.0NAC domain-containing protein 100
SwissprotQ9FLJ21e-152NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A067ENR20.0A0A067ENR2_CITSI; Uncharacterized protein
STRINGXP_006477475.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-150NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]