PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017783m
Common NameCISIN_1g011483mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 367aa    MW: 39947.4 Da    PI: 7.4536
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017783mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.84e-271767960
                       EEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY  9 KYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
                       KYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  orange1.1g017783m 17 KYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPK 67
                       9*********************************.***************85 PP
2WRKY107.56.4e-34188246159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  orange1.1g017783m 188 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHD 246
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182904.58E-191768IPR003657WRKY domain
SMARTSM007742.3E-231767IPR003657WRKY domain
PfamPF031062.6E-191766IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-211768IPR003657WRKY domain
PROSITE profilePS5081119.0261768IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-38173248IPR003657WRKY domain
SuperFamilySSF1182906.02E-30180248IPR003657WRKY domain
PROSITE profilePS5081138.147183248IPR003657WRKY domain
SMARTSM007741.2E-39188247IPR003657WRKY domain
PfamPF031062.6E-26189246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MELSGIHKAR CEIGTEKYGQ KQVKGSENPR SYYKCTFPSC PTKKKVERSL DGQITEIVYK  60
GSHNHPKPQS TRRSSSSSVN SNAIQASTQH SNEIQDQSYA THGSGQMDSA ATPENSSISV  120
GDDDVDQGSQ KSKSGGGGAG GGDDFDEDEP EAKRWKIEGE SEGISAPGSR TVREPRVVVQ  180
TTSDIDILDD GYRWRKYGQK VVKGNPNPRS YYKCTHPGCP VRKHVERASH DLRAVITTYE  240
GKHNHDVPAA RGSGSRALPD NSSNNNHNSN SNSNNNGTLP VRASAVAHHP NNNSILNPVH  300
NLRVSSSEGQ APYTLEMLQG SGSFGFPGYG NALRSYMNEG QQQDNVLSRA KEEPRDHDTF  360
FESLLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-38179249878Probable WRKY transcription factor 4
2lex_A3e-38179249878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.2370.0fruit| vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7089841e-110JF708984.1 Dimocarpus longan WRKY transcription factor 36-3 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431962.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R41e-117WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A067DL380.0A0A067DL38_CITSI; Uncharacterized protein
STRINGXP_006431962.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-105WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]