PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017665m
Common NameCISIN_1g017665mg, LOC102628637
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 369aa    MW: 41780 Da    PI: 8.3374
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017665mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.28e-54111411128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+ +yLkkkv++ ++++ ++i++vdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk +
  orange1.1g017665m  11 LPPGFRFHPTDEELILHYLKKKVASMPFPV-SIIADVDIYKFDPWDLPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKII 101
                        79****************************.89***************988899************************************** PP

                NAM  93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        l++    ++e++g+kk Lvfykgr pkg+kt+W+mheyrl
  orange1.1g017665m 102 LATsvgaHQENIGVKKALVFYKGRPPKGVKTNWIMHEYRL 141
                        99999988899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-648173IPR003441NAC domain
PROSITE profilePS5100562.23111173IPR003441NAC domain
PfamPF023654.5E-2812141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MVCIKNPESA LPPGFRFHPT DEELILHYLK KKVASMPFPV SIIADVDIYK FDPWDLPAKA  60
AFGEKEWYFF SPRDRKYPNG ARPNRAAASG YWKATGTDKI ILATSVGAHQ ENIGVKKALV  120
FYKGRPPKGV KTNWIMHEYR LAENPKNLNH TKMRPKDSSM RLDDWVLCRI YRKSHVSLPT  180
SAGAASDHDL EEEEEKFNLH DTLLPILRSP PSHNTTLNPQ KSSSFSNLLD AMDYSMLSNF  240
LSENQTSHTG SESNPLFNSG ILEQHHSSFN NGNGNGANTN TSCTNSFLIQ KLPQLNYSVS  300
NNMENQQHKR PHPNIDHHEN MLHPSKKFIT TCSFSSSTTD QFDPPYNYLH QPFLTQQLLL  360
SPHLQFQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-731017316165NO APICAL MERISTEM PROTEIN
1ut4_B4e-731017316165NO APICAL MERISTEM PROTEIN
1ut7_A4e-731017316165NO APICAL MERISTEM PROTEIN
1ut7_B4e-731017316165NO APICAL MERISTEM PROTEIN
3swm_A4e-731017319168NAC domain-containing protein 19
3swm_B4e-731017319168NAC domain-containing protein 19
3swm_C4e-731017319168NAC domain-containing protein 19
3swm_D4e-731017319168NAC domain-containing protein 19
3swp_A4e-731017319168NAC domain-containing protein 19
3swp_B4e-731017319168NAC domain-containing protein 19
3swp_C4e-731017319168NAC domain-containing protein 19
3swp_D4e-731017319168NAC domain-containing protein 19
4dul_A4e-731017316165NAC domain-containing protein 19
4dul_B4e-731017316165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.42570.0fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443351.10.0NAC transcription factor 47
RefseqXP_006479050.10.0NAC transcription factor 47
SwissprotQ84TD61e-121NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A067DRQ70.0A0A067DRQ7_CITSI; Uncharacterized protein
TrEMBLV4U3450.0V4U345_9ROSI; Uncharacterized protein
STRINGXP_006479050.10.0(Citrus sinensis)
STRINGXP_006443351.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77232540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-117NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]