PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017142m
Common NameCISIN_1g017142mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 377aa    MW: 43092 Da    PI: 5.6062
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017142mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.71.4e-3351333128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        +GfrF Ptde+++     k+ +   +++ ++ike+d+y++ePw+Lp  +++++ee+ wyfF++   k+a++kr +r tk+gyWk+tg+  ++
  orange1.1g017142m   5 VGFRFYPTDEQIILLLTMKRRDPAGFSV-RTIKEIDLYSFEPWELPchSEIQSEEEVWYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNI 95 
                        7************544444444445777.78***************6448888999************************************ PP

                NAM  93 lsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                        ++k k+e++g+kk+L f +   a +  kt+Wv+he ++
  orange1.1g017142m  96 KRKyKTEVIGTKKILSFSRDdAAAEKDKTEWVIHEIAV 133
                        *9988999**********764677889********875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.1773151IPR003441NAC domain
SuperFamilySSF1019411.44E-364151IPR003441NAC domain
PfamPF023651.6E-165131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDSLVGFRFY PTDEQIILLL TMKRRDPAGF SVRTIKEIDL YSFEPWELPC HSEIQSEEEV  60
WYFFCEPCYK NAESKRVRRR TKEGYWKKTG RGSNIKRKYK TEVIGTKKIL SFSRDDAAAE  120
KDKTEWVIHE IAVENSPDFE KDFVVCRLER KREKKTLGVV STKRKREKKT LGVVSTKRKR  180
EKKLGVSTSD GDQSCQNLTF KKSHVAEDTN RNHVAEKVDL VSIAGNIVLV PELQVGDHSI  240
SYYRNHVAEK IVEDSVQAET RRLAELNRRG DGYDARNDAS VWALQSSDYP EQESSDYNGS  300
SCGSGLLNSQ LDGEQVVGQF NSRRDFQTEY SPEETGETTP GFFTSKSDEG VYMEGCSDAN  360
TGTESFIEWI DVLFDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-19615220166NO APICAL MERISTEM PROTEIN
1ut4_B2e-19615220166NO APICAL MERISTEM PROTEIN
1ut7_A2e-19615220166NO APICAL MERISTEM PROTEIN
1ut7_B2e-19615220166NO APICAL MERISTEM PROTEIN
4dul_A2e-19615220166NAC domain-containing protein 19
4dul_B2e-19615220166NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162182KRKREKKTLGVVSTKRKREKK
2163179RKREKKTLGVVSTKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024041043.10.0NAC domain-containing protein 71-like
TrEMBLA0A067DU330.0A0A067DU33_CITSI; Uncharacterized protein
STRINGXP_006485380.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13336429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.13e-27NAC domain containing protein 89