PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g016542m | ||||||||
Common Name | CISIN_1g016542mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 388aa MW: 43065.9 Da PI: 7.0391 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.6 | 6.8e-55 | 18 | 151 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdee++++yL++kv ++++++ +i evd++k+ePwdLp+k+k +eke yfF++rd+ky+tg r+nrat++gyWkatgkdke+ orange1.1g016542m 18 LPPGFRFHPTDEEIITHYLTEKVMNTSFSA-CAIGEVDLNKSEPWDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEI 108 79*************************999.67***************99999*************************************** PP NAM 93 lsk......kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ +g lvg+kktLvfykgrapkgekt+Wvmheyrle orange1.1g016542m 109 YKGnkggvgGGGLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 151 *976666665666****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.5E-63 | 7 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.171 | 18 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-29 | 19 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MEEAVVDQHN HRQGVIDLPP GFRFHPTDEE IITHYLTEKV MNTSFSACAI GEVDLNKSEP 60 WDLPSKAKMG EKEFYFFCQR DRKYPTGMRT NRATEAGYWK ATGKDKEIYK GNKGGVGGGG 120 LVGMKKTLVF YKGRAPKGEK TNWVMHEYRL EGKFSYYNLP KAAKDEWVVC RVFHKNIGGG 180 IKKIPIPGLP MNSSFGDDFF ANYASLPPLM DPPGSSSFGN GGHQNEFKPM NTASTSSRSY 240 NIPADNQNFL QPHQIPIQNQ IFSYHQNNNN PNPGYLHQGT IRSSTGAISS LMGAGFEGNG 300 DGQAILRALA STSHHHQQHN LESSSQCKVE QFSSNQSMIS RSQDTGLSTD MNTTTEISSV 360 VSKQDNKSYD QDLDATSIAE LDSFWDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-51 | 16 | 176 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-51 | 16 | 176 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-51 | 16 | 176 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-51 | 16 | 176 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-51 | 16 | 176 | 15 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-51 | 16 | 176 | 15 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.6477 | 0.0 | flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00518 | DAP | Transfer from AT5G18270 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605153 | 2e-47 | KR605153.1 Manihot esculenta NAC transcription factors 15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443353.1 | 0.0 | NAC domain-containing protein 87 | ||||
Refseq | XP_006479052.1 | 0.0 | NAC domain-containing protein 87-like | ||||
Swissprot | Q9FK44 | 1e-110 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A067E3R2 | 0.0 | A0A067E3R2_CITSI; Uncharacterized protein | ||||
STRING | XP_006479052.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006443353.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2269 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 1e-104 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g016542m |
Publications ? help Back to Top | |||
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