PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g016352m
Common NameCISIN_1g016352mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 392aa    MW: 43269.6 Da    PI: 9.176
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g016352mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-05628123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C+k F r  nL+ H r H
  orange1.1g016352m  6 FVCEICNKGFQRDQNLQLHRRGH 28
                       89*******************88 PP
2zf-C2H213.20.0002882104123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC++C+k +  +s+ k H +t+
  orange1.1g016352m  82 WKCEKCSKKYAVQSDWKAHSKTC 104
                        58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.81E-7528No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121715.9E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.949628IPR007087Zinc finger, C2H2
SMARTSM003550.017628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355964777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.7E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.81E-777102No hitNo description
SMARTSM0035514082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSTT EIRKRVYVCP EPSCVHHNPA  60
RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTKEYK CDCGTIFSRR  120
DSFITHRAFC DALAEESQKA NQGLNPQLGH VSEHISSMPI NNHTENNNNP LAHHELMPMP  180
PKPFNTMAAA SIFESSNNNL QQSAAASASA SLSATALLQK AAQMGATASN GSMMSSPMMH  240
KSLVTSMAPP SFVAIPKDHQ SLSAAAASME EISLSSSAQF FSANIGHAEG SSAMNDVGMF  300
YRFLDQNNAA LMKSLEHDES NKSGNNQSVL NNGDVMTVDF MGIGGSRTRN HFQQQQSQEL  360
KFGSGINNIG QPRMQSLNHF QQQQQDVPFL N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-3578139364Zinc finger protein JACKDAW
5b3h_F3e-3578139364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.76680.0fruit| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433386.10.0protein indeterminate-domain 2
RefseqXP_006472060.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ65e-98IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A067EZA90.0A0A067EZA9_CITSI; Uncharacterized protein
TrEMBLA0A2H5PYG10.0A0A2H5PYG1_CITUN; Uncharacterized protein
STRINGXP_006472060.10.0(Citrus sinensis)
STRINGXP_006433386.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1964967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.12e-84C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]