PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g016337m
Common NameCISIN_1g016181mg, LOC102623706
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 392aa    MW: 44308.4 Da    PI: 5.4579
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g016337mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.12.8e-26301603128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         G++F+Pt e l+  yL+  v+g++  +++  i+evd+y++eP++L+ k+++ ++ ++yfFs+ +kky++g+ ++r++k g+Wk tgk ++v
  orange1.1g016337m  30 DGIKFKPTAEVLIFVYLAGMVSGSTdGPIFPLIQEVDVYQYEPSKLKsKAHDFGDGNMYFFSRVQKKYKKGSIRERKAKGGFWK-TGKCNTV 120
                        59*********************996667778**************94455558889**************************9.9**9*** PP

                NAM  93 lskkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                           k+  +g+ ++L++y      +  +k+ kt+W+m ey l
  orange1.1g016337m 121 RG-KDGGTGTERSLTYYsyrhdPKPGEKPIKTHWLMREYML 160
                        99.66689*********6543323445666*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.58128178IPR003441NAC domain
SuperFamilySSF1019412.62E-2830177IPR003441NAC domain
PfamPF023653.4E-1331159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MAPQSAMASS QNINEEADHN RDWETWKKVD GIKFKPTAEV LIFVYLAGMV SGSTDGPIFP  60
LIQEVDVYQY EPSKLKSKAH DFGDGNMYFF SRVQKKYKKG SIRERKAKGG FWKTGKCNTV  120
RGKDGGTGTE RSLTYYSYRH DPKPGEKPIK THWLMREYML KRPKNDKESM ALCVVYFHGQ  180
RDNEDKQNSH PDVEAEGSPT RNNPALIHWD SNLEAINLEE TLPPSWSYSN VFALSPNCYP  240
LLNSTPNPAA IPYEQPLFFP PNSFQNTTDI TFASWGSISP APNNNFPLYS SNLNPAASTP  300
ERPSSNSFQN MINMMGVSSA APADSIINTP NNWCSTLAEL DPQNWMVERQ EADGSPYQYS  360
SNDDIQLLEQ YLFENDQMWF QAFPIQQSPK S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-133117620163NO APICAL MERISTEM PROTEIN
1ut4_B6e-133117620163NO APICAL MERISTEM PROTEIN
1ut7_A6e-133117620163NO APICAL MERISTEM PROTEIN
1ut7_B6e-133117620163NO APICAL MERISTEM PROTEIN
3swm_A5e-133117623166NAC domain-containing protein 19
3swm_B5e-133117623166NAC domain-containing protein 19
3swm_C5e-133117623166NAC domain-containing protein 19
3swm_D5e-133117623166NAC domain-containing protein 19
3swp_A5e-133117623166NAC domain-containing protein 19
3swp_B5e-133117623166NAC domain-containing protein 19
3swp_C5e-133117623166NAC domain-containing protein 19
3swp_D5e-133117623166NAC domain-containing protein 19
4dul_A6e-133117620163NAC domain-containing protein 19
4dul_B6e-133117620163NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006471482.10.0NAC domain-containing protein 2
TrEMBLA0A067ETK50.0A0A067ETK5_CITSI; Uncharacterized protein
TrEMBLV4SYM70.0V4SYM7_9ROSI; Uncharacterized protein
STRINGXP_006471482.10.0(Citrus sinensis)
STRINGXP_006432687.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.12e-17NAC domain containing protein 45