PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g016181m

Common Name

CISIN_1g016181mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 395aa MW: 44680.9 Da PI: 5.4579

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g016181m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	84	2.9e-26	30	160	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 G++F+Pt e l+ yL+ v+g++ +++ i+evd+y++eP++L+ k+++ ++ ++yfFs+ +kky++g+ ++r++k g+Wk tgk ++v orange1.1g016181m 30 DGIKFKPTAEVLIFVYLAGMVSGSTdGPIFPLIQEVDVYQYEPSKLKsKAHDFGDGNMYFFSRVQKKYKKGSIRERKAKGGFWK-TGKCNTV 120 59*******************996667778**********94455558889**********************9.99* PP NAM 93 lskkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 k+ +g+ ++L++y + +k+ kt+W+m ey l orange1.1g016181m 121 RG-KDGGTGTERSLTYYsyrhdPKPGEKPIKTHWLMREYML 160 99.66689*****6543323445666*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.572	28	181	IPR003441	NAC domain
SuperFamily	SSF101941	4.05E-27	30	179	IPR003441	NAC domain
Pfam	PF02365	3.5E-13	31	159	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MAPQSAMASS QNINEEADHN RDWETWKKVD GIKFKPTAEV LIFVYLAGMV SGSTDGPIFP 60 LIQEVDVYQY EPSKLKSKAH DFGDGNMYFF SRVQKKYKKG SIRERKAKGG FWKTGKCNTV 120 RGKDGGTGTE RSLTYYSYRH DPKPGEKPIK THWLMREYML KRPKNDKESM LMQALCVVYF 180 HGQRDNEDKQ NSHPDVEAEG SPTRNNPALI HWDSNLEAIN LEETLPPSWS YSNVFALSPN 240 CYPLLNSTPN PAAIPYEQPL FFPPNSFQNT TDITFASWGS ISPAPNNNFP LYSSNLNPAA 300 STPERPSSNS FQNMINMMGV SSAAPADSII NTPNNWCSTL AELDPQNWMV ERQEADGSPY 360 QYSSNDDIQL LEQYLFENDQ MWFQAFPIQQ SPKS*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MAPQSAMASS QNINEEADHN RDWETWKKVD GIKFKPTAEV LIFVYLAGMV SGSTDGPIFP  60
LIQEVDVYQY EPSKLKSKAH DFGDGNMYFF SRVQKKYKKG SIRERKAKGG FWKTGKCNTV  120
RGKDGGTGTE RSLTYYSYRH DPKPGEKPIK THWLMREYML KRPKNDKESM LMQALCVVYF  180
HGQRDNEDKQ NSHPDVEAEG SPTRNNPALI HWDSNLEAIN LEETLPPSWS YSNVFALSPN  240
CYPLLNSTPN PAAIPYEQPL FFPPNSFQNT TDITFASWGS ISPAPNNNFP LYSSNLNPAA  300
STPERPSSNS FQNMINMMGV SSAAPADSII NTPNNWCSTL AELDPQNWMV ERQEADGSPY  360
QYSSNDDIQL LEQYLFENDQ MWFQAFPIQQ SPKS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-13	31	179	20	163	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-13	31	179	20	163	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-13	31	179	20	163	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-13	31	179	20	163	NO APICAL MERISTEM PROTEIN
3swm_A	2e-13	31	179	23	166	NAC domain-containing protein 19
3swm_B	2e-13	31	179	23	166	NAC domain-containing protein 19
3swm_C	2e-13	31	179	23	166	NAC domain-containing protein 19
3swm_D	2e-13	31	179	23	166	NAC domain-containing protein 19
3swp_A	2e-13	31	179	23	166	NAC domain-containing protein 19
3swp_B	2e-13	31	179	23	166	NAC domain-containing protein 19
3swp_C	2e-13	31	179	23	166	NAC domain-containing protein 19
3swp_D	2e-13	31	179	23	166	NAC domain-containing protein 19
4dul_A	2e-13	31	179	20	163	NAC domain-containing protein 19
4dul_B	2e-13	31	179	20	163	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006471482.1	0.0	NAC domain-containing protein 2
TrEMBL	A0A067F1Z1	0.0	A0A067F1Z1_CITSI; Uncharacterized protein
STRING	XP_006471482.1	0.0	(Citrus sinensis)
STRING	XP_006432687.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21284	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	4e-18	NAC domain containing protein 86

Link Out ? help Back to Top
Phytozome	orange1.1g016181m