PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g015846m | ||||||||
Common Name | CISIN_1g015846mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 400aa MW: 44600.5 Da PI: 10.0257 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.7 | 5e-17 | 321 | 373 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ rg++ AeIrd + g +r++lg+f tae+Aa a+++a+ +++g+ orange1.1g015846m 321 RYRGVRLRP-RGKYGAEIRDqF---GgGGARIWLGTFETAEDAALAYDRAAYRMRGP 373 7********.8*********77...3345**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50808 | 9.149 | 13 | 60 | IPR003656 | Zinc finger, BED-type |
SMART | SM00614 | 2.4E-12 | 13 | 64 | IPR003656 | Zinc finger, BED-type |
SuperFamily | SSF57667 | 2.08E-8 | 16 | 66 | No hit | No description |
Pfam | PF02892 | 3.0E-5 | 16 | 61 | IPR003656 | Zinc finger, BED-type |
PROSITE profile | PS50808 | 10.385 | 131 | 187 | IPR003656 | Zinc finger, BED-type |
SMART | SM00614 | 2.0E-13 | 131 | 182 | IPR003656 | Zinc finger, BED-type |
Pfam | PF02892 | 8.6E-7 | 134 | 179 | IPR003656 | Zinc finger, BED-type |
SuperFamily | SSF57667 | 8.33E-9 | 134 | 183 | No hit | No description |
SMART | SM00380 | 1.9E-31 | 321 | 386 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.008 | 321 | 380 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-10 | 321 | 372 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-19 | 321 | 381 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.96E-27 | 321 | 380 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.6E-26 | 321 | 380 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-8 | 322 | 333 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-8 | 346 | 362 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MVRSEQNENK RRKLKSKVWD EFTKYKGEDG TDWAICSLCK KEFDGSSKKG TTHLKNHLDR 60 CRAKIKFKGG SGDTGKSIKT RDLADINEKS VIDLIKNSFD AKGMTTFQVN QEEKESGIVA 120 RNQQNEKKGK KLKSKVWDVF TKYKGEDGMD WAKCSICEKE FDGSSKKGTT HLKNHLQRCR 180 ANYKRKEAGT GGDDDKSVKT MPIVIKEKSV KDSFDAVPEA SRCHLLGELE SELSVSTSSN 240 WTHSRMSSSF SRLYPCLADN WANLPLVEDD SEDIVVYNLL RDALTVGMGP TAAARRSSPG 300 APAVPQADQS ATALVPGEGR RYRGVRLRPR GKYGAEIRDQ FGGGGARIWL GTFETAEDAA 360 LAYDRAAYRM RGPRAHLNFP LLPLVSREPE PVRIRARKI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-23 | 318 | 381 | 2 | 64 | ATERF1 |
3gcc_A | 1e-23 | 318 | 381 | 2 | 64 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024043253.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A067EHU3 | 0.0 | A0A067EHU3_CITSI; Uncharacterized protein | ||||
STRING | XP_006478768.1 | 1e-125 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 3e-21 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g015846m |