PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g015775m
Common NameCISIN_1g015775mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 401aa    MW: 44735 Da    PI: 8.4696
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g015775mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-20222271356
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+ge
  orange1.1g015775m 222 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAMAYDTAAYMLRGE 271
                        8******9.**********955...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.89E-32220279No hitNo description
SuperFamilySSF541719.15E-23221279IPR016177DNA-binding domain
SMARTSM003801.3E-36221284IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-31221279IPR001471AP2/ERF domain
PROSITE profilePS5103222.682221278IPR001471AP2/ERF domain
PRINTSPR003676.2E-11222233IPR001471AP2/ERF domain
PfamPF008476.4E-14222271IPR001471AP2/ERF domain
PRINTSPR003676.2E-11244260IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MENFMHKENY PSYFHGLATG SKFLGDQVTW GALSNASCQD DSSVESSSSA EEACGANLIN  60
KIPGFVKRDV VKEKNSSIPF VSGFDSVPVN FLESFPKLNR QAAANQVSDQ PPSSPSSLSN  120
FPNLTLFFQG SPMLNPSAAA DDDSLGNKDT SFTQLPQSSN EWLKMNQSLA NYSSKGFGDY  180
WLSTIKTQPM KYTGRKLQSQ HHHHQKCNSL EATAMASPGK LFRGVRQRHW GKWVAEIRLP  240
RNRTRVWLGT FDTAEEAAMA YDTAAYMLRG EYAHLNFPER KHQLKANSLN GNTATLLEAK  300
LQALSHQKPN NDHQQQQQKQ APTTKKNNIS HHENTSNTNK KLKGILESKV VIGSHHQELV  360
MENKKTHHHQ EVLDVDAVQL SRMPSLDMDT IWDSLLVPDS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-21217280165ATERF1
3gcc_A7e-21217280165ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024040367.10.0ethylene-responsive transcription factor ERF062
TrEMBLA0A067DQ470.0A0A067DQ47_CITSI; Uncharacterized protein
STRINGXP_006493082.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.13e-61ERF family protein