PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g015665m
Common NameCISIN_1g015635mg, LOC102622798
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 404aa    MW: 46015.9 Da    PI: 4.8048
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g015665mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34141052102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl k+ye+++d++++ ++sws++++sf+v+++ +fa+++LpkyFkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+ e 
  orange1.1g015665m  14 FLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEDFVRGQPER 96 
                        9***************************************************************9998.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  orange1.1g015665m  97 LKNIHRRKP 105
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.71E-349103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.8E-3710103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-6010103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDDGQGSSNS LPPFLAKTYE MVDDSSTDLT VSWSSSNKSF IVWNPPDFAR DLLPKYFKHN  60
NFSSFIRQLN TYGFRKVDPE QWEFANEDFV RGQPERLKNI HRRKPVHSHS NQNLHGQGTP  120
LTESERQGLK DDIERLKKEK EILLLELQRH EQERQGFESQ MQLLRERFQL MEQRQQKMVS  180
FVGRALQKPG LESNFGAHLE NHDRKRRLPR IDYFYDEANI EDNPMGTSQI VAGADSADIS  240
SSNMEKFEQL ESSMTFWENI VQDVGQSCFQ PNSSLELDES TSCADSPAIS CIQLNVDARP  300
KSPGIDMNSE PAVTAATEPV PSKEPETATT IPLQAGVNDV FWEQFLTENP GSSDAQEVQS  360
ERKECDGKKN ENKPADHGKF WWNMRNVNSL AEQMGHLTPA ERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-23410319129Heat shock factor protein 1
5d5v_B2e-23410319129Heat shock factor protein 1
5d5v_D2e-23410319129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207DRKRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.24320.0flower| fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467597.10.0heat stress transcription factor A-4a
RefseqXP_006467598.10.0heat stress transcription factor A-4a
RefseqXP_015382489.10.0heat stress transcription factor A-4a
SwissprotO494031e-135HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A067GR600.0A0A067GR60_CITSI; Uncharacterized protein
STRINGXP_006467594.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-123heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. P
    The heat shock factor A4A confers salt tolerance and is regulated by oxidative stress and the mitogen-activated protein kinases MPK3 and MPK6.
    Plant Physiol., 2014. 165(1): p. 319-34
    [PMID:24676858]