PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g015616m
Common NameCISIN_1g015616mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 404aa    MW: 44615 Da    PI: 4.9465
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g015616mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.67.2e-30209267259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp++ ++ Y+g+H+h+
  orange1.1g015616m 209 ADLWAWRKYGQKPIKGSPYPRNYYRCSSSkGCAARKQVERSNTDPNIYIVSYTGDHTHP 267
                        699************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-30197269IPR003657WRKY domain
SuperFamilySSF1182904.05E-26202269IPR003657WRKY domain
PROSITE profilePS5081132.386203269IPR003657WRKY domain
SMARTSM007742.4E-36208268IPR003657WRKY domain
PfamPF031062.0E-25210267IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MGEKFPAKAA DNWDLQAVVR CFSSANNTTA NYTPQIDTTT SGTAAAADES SLEDPLAFLA  60
TMKFDEDDDP FSFPNLFENK NIGFQELEDS YKPFYSTPSS VPEGLINHQQ QQQQQQQQLN  120
SSIVSPMSSS SFPPFVIGEQ NNQQTHYVQQ PLQQQDPQIH QQKQQQLPIR LSSAIPLRPA  180
MPSHAHRSRK RKSPIKKMVC QVTEEKLSAD LWAWRKYGQK PIKGSPYPRN YYRCSSSKGC  240
AARKQVERSN TDPNIYIVSY TGDHTHPRPT HRNSLAGSTR NKFSGTQNHP VSTTPPPPPL  300
PPPTSSSSPL SATCQSPSAP TTPAVDEEMS SIENILANAA DHDKDTSKTL MEEEEEEDDD  360
DDDDLFEDLL IPNLAARGID EDFFKGLKQF GSTAASGSGD NHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-202092701780Disease resistance protein RRS1
5w3x_D4e-202092701780Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187192SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422058.10.0probable WRKY transcription factor 27
SwissprotQ9FLX86e-58WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLA0A067EP060.0A0A067EP06_CITSI; Uncharacterized protein
STRINGXP_006422058.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99982636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.15e-55WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mukhtar MS,Liu X,Somssich IE
    Elucidating the role of WRKY27 in male sterility in Arabidopsis.
    Plant Signal Behav, 2017. 12(9): p. e1363945
    [PMID:28816593]