PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g015162m
Common NameCISIN_1g015162mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 413aa    MW: 46651.3 Da    PI: 5.0506
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g015162mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1118.3e-35161072102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl k+ye+++d+ +++l+sws++g sf+v+++ +fak++Lp yFkh+nf+SFvRQLn+YgF+k++ ++         weF++++F +g+++l
  orange1.1g015162m  16 FLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEEFIRGQRHL 98 
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  orange1.1g015162m  99 LKNIHRRKP 107
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.2E-387100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.26E-3511105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-6212105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDESQGQGSS NSPAPFLIKT YEMVDDPLTN SLVSWSQSGG SFIVWNPPDF AKDLLPLYFK  60
HNNFSSFVRQ LNTYGFRKID PDQWEFANEE FIRGQRHLLK NIHRRKPVHS HSTQSPTPIT  120
ETERNEFEAK IERLKKENSL LQLELRRRES GNHEFEYHVQ SVRERLRYLE NRQTQMIACL  180
ANLLKKPGFS SALNQQAEVH SKKRRLLRPT TIEYLDDVKS ASLSVNEQKE NPDATFDPSP  240
ALNLEQIDRL ESSVDFWTFF LCGIGEAFNQ DVYDFGVLRP VSAVTDDEIE EGVSSEEHDG  300
LSNVSSPKSM DVHSSPKQAA SSENPVDGAS ATEDETANSS VKNRANDQFW EQFLTETPAA  360
AASSSARPES RDPESGSTYV NKPAEADSKK FWWHSNNLDT LTRHFGNLTS AG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-26810522129Heat shock factor protein 1
5d5v_B1e-26810522129Heat shock factor protein 1
5d5v_D1e-26810522129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920895e-95KR492089.1 UNVERIFIED: Citrus sinensis clone 156-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448027.10.0heat stress transcription factor A-4b
RefseqXP_006492257.10.0heat stress transcription factor A-4b-like
TrEMBLA0A067ETX30.0A0A067ETX3_CITSI; Uncharacterized protein
STRINGXP_006492257.10.0(Citrus sinensis)
STRINGXP_006448027.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167341012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-73heat shock transcription factor A4A