PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g014735m | ||||||||
Common Name | CISIN_1g007099mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 420aa MW: 46369.3 Da PI: 6.511 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 61.5 | 1.5e-19 | 360 | 397 | 2 | 38 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkv 38 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v orange1.1g014735m 360 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQV 397 7************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.1E-21 | 344 | 397 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-18 | 352 | 399 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.875 | 354 | 397 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.9E-18 | 359 | 407 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-16 | 361 | 397 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MDKGWGLTLD SDHPIVSNLN FFTSNKPKPS LARFRTNRDM AASGAADSAS VRMFQLPASD 60 NSNAPSSSDD NRVAVDEVDF FSDDKNRVSI SDHREDDRNK TTNSVHIKKE NSHDQLRHRT 120 GLDVNTGLHL LTAANTGSDQ STVDDGVSSD HADEKRTKIE LTQLQVELQQ MNTENQRLRD 180 MLSQVTNNYN ALQMHIIALM QQQQENRRAP ESNQAHEVVE GKDEGKKHDD QVMVPRQFIG 240 LGPSAETDHE VSNCSSDEER TLSGTPPNIV EAASKEHVNS NGKNEIVSFD DQAAAAAAAE 300 NSNGKRIGRE ESPESETQGW GPNNKVQKLS SAKGIDQSNE ATMRKARVSV RARSEAPMIT 360 DGCQWRKYGQ KMAKGNPCPR AYYRCTMAVG CPVRKQVCFI NIHLCSSLCH IIIVINKLS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.1053 | 1e-156 | fruit| vegetative meristem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00428 | DAP | Transfer from AT4G04450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006467403.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q93WT0 | 3e-93 | WRK31_ARATH; Probable WRKY transcription factor 31 | ||||
TrEMBL | A0A067GSA4 | 0.0 | A0A067GSA4_CITSI; Uncharacterized protein | ||||
STRING | XP_006467403.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22070.1 | 2e-92 | WRKY DNA-binding protein 31 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g014735m |