PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g014239m
Common NameCISIN_1g014239mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CPP
Protein Properties Length: 429aa    MW: 47855.3 Da    PI: 6.8397
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g014239mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.81.4e-1586125241
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                        ++k+CnCkkskClk+YC+Cfaag +C ++C Ce+C+Nk e
  orange1.1g014239m  86 DCKRCNCKKSKCLKLYCDCFAAGIYCIDSCACESCFNKPE 125
                        789**********************************976 PP
2TCR53.64.5e-17172210139
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        ++k+gCnCkkskClkkYCeCf+a++ Cs+ C+Ce+C+N+
  orange1.1g014239m 172 RHKRGCNCKKSKCLKKYCECFQANVGCSDGCRCEGCSNS 210
                        589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.0E-1685126IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.63286212IPR005172CRC domain
PfamPF036381.8E-1188123IPR005172CRC domain
SMARTSM011141.1E-17172213IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.2E-12174210IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MAELMPISSD LMPTGRIHDY MKNDQLDDQA VVGASLVISQ YTDSMKQISD SLQMTLSEQQ  60
AAPCEGMMLT SEIEEKKASN SSESEDCKRC NCKKSKCLKL YCDCFAAGIY CIDSCACESC  120
FNKPEYEETV TDTRQQIQSR NPLAFAPKIV GHADSAANVV EDGNLTTPAS ARHKRGCNCK  180
KSKCLKKYCE CFQANVGCSD GCRCEGCSNS FGRKTESKYQ KVQRWENQSH VKLDAAANVT  240
DSTKTRTIKP FSARWEDLPD MSHLTPLSYS YPEAEASSVS PSMRDFQNVR RTHLHHESSF  300
QSSVNPHWQS PMSSMPQFHE DFAEHNRRSS YCKVHDTTKE DNMPEIQKDT STPSNASKAD  360
IPNKKQISPP QFQSQELRSS STPGGLESDH KFSWKNVPSF PPLTPYSKSK DDIGQTGSDF  420
KGHPSDNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-178820912120Protein lin-54 homolog
5fd3_B3e-178820912120Protein lin-54 homolog
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024951272.10.0protein tesmin/TSO1-like CXC 3
TrEMBLA0A067EG630.0A0A067EG63_CITSI; Uncharacterized protein
STRINGXP_006465501.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15696813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-66Tesmin/TSO1-like CXC domain-containing protein