PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g014130m | ||||||||
Common Name | CISIN_1g014130mg, LOC102623759 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 431aa MW: 48268.1 Da PI: 5.4272 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171 | 3.7e-53 | 29 | 156 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 l+pGfrFhPtdeelv++yLk+kv ++++++ ++i evdiyk ePwdL + +k++++ewyfFs+ dkky +g r nrat++gyWkatgkd+ orange1.1g014130m 29 LAPGFRFHPTDEELVSYYLKRKVYNRPFRF-NAIGEVDIYKNEPWDLAdfSWMKTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDR 119 579*************************99.89**************8544889999*********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 e+ + +++l+g+kktLvf++grap+g++t+Wvmheyrl orange1.1g014130m 120 EIRR-ESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRL 156 ***9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-60 | 25 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.676 | 29 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-28 | 31 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 431 aa Download sequence Send to blast |
MGNEGLALTT TTPATPATPA AAKKNTAALA PGFRFHPTDE ELVSYYLKRK VYNRPFRFNA 60 IGEVDIYKNE PWDLADFSWM KTRDQEWYFF SPLDKKYVNG ARMNRATRKG YWKATGKDRE 120 IRRESQLIGM KKTLVFHSGR APDGQRTNWV MHEYRLVEEE FEQLGPGLAS YVLCRVFHKN 180 NIGPPNGNRY APFVEEEWDD GMATFPGEDA ADEVVAGDDV GTERNAGERM RVEQDSQSIN 240 KEPLNINELP KDAQNDLLDC KRERTDGCPS LCVLNTQAPL PLLQYKRRRQ NDSGSNRSNG 300 SDNSSGAGQD PSSSTTTTAE TATMMATNSA TTAAISALLE FSLMESIEPR ETSCVPTAAP 360 FEANDFDSQM PPDCAKLIKE LKNQVREVVV ERATLKLDLM SAQAMINILH SRIDFLTREN 420 EDLKRKNKAA * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-47 | 28 | 181 | 19 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-47 | 28 | 181 | 19 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-47 | 28 | 181 | 19 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-47 | 28 | 181 | 19 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-47 | 28 | 181 | 19 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-47 | 28 | 181 | 19 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-47 | 28 | 181 | 19 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-47 | 28 | 181 | 19 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436533.1 | 0.0 | NAC domain containing protein 50 | ||||
Refseq | XP_006485309.1 | 0.0 | NAC domain containing protein 50 | ||||
Swissprot | Q9SQX9 | 1e-143 | NAC50_ARATH; NAC domain containing protein 50 | ||||
TrEMBL | A0A067E8M2 | 0.0 | A0A067E8M2_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PQ77 | 0.0 | A0A2H5PQ77_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SPQ5 | 0.0 | V4SPQ5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006485309.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006436533.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1780 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10480.2 | 1e-128 | NAC domain containing protein 50 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g014130m |
Entrez Gene | 102623759 |
Publications ? help Back to Top | |||
---|---|---|---|
|