PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g013945m
Common NameCISIN_1g010160mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 434aa    MW: 48421.9 Da    PI: 5.9035
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g013945mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.1e-1761151199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f k +++s+v +  ++ lp  f+++h  +  +++ ++ledesg +++ k+  +k++    l++GW++F  a++L egD++vF+l+     +l
  orange1.1g013945m  61 FAKSMVRSHVASCFWMGLPGYFCKSHLPD--KDTSVVLEDESGIQYTAKYFAEKTG----LSAGWRQFSTAHNLVEGDVLVFQLIA--PLKL 144
                        889***********************544..4567***************555555....***********************997..7778 PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                        +v ++r+
  orange1.1g013945m 145 KVYIIRA 151
                        9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-2053152IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-2254152IPR015300DNA-binding pseudobarrel domain
CDDcd100173.87E-2559150No hitNo description
PfamPF023623.8E-1561151IPR003340B3 DNA binding domain
SMARTSM010195.3E-1861152IPR003340B3 DNA binding domain
PROSITE profilePS5086312.57661152IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MKKNYELEQV EPDSRAGGKT KSSKKNKDVV DGKCSPVEPK SPAMIRAEEV QSNLEPQFPS  60
FAKSMVRSHV ASCFWMGLPG YFCKSHLPDK DTSVVLEDES GIQYTAKYFA EKTGLSAGWR  120
QFSTAHNLVE GDVLVFQLIA PLKLKVYIIR ANDFTEVDGA LGLLNLDAPS KQNDTAELEI  180
DNGEPIVVAN QNTKKKRKKS LPLAVVQKKN KKSVQGRSAS NLGQPAEQSE NDSEEVGSEV  240
LEGFKISTPP VQFKDVTSLD NFNILVDGLV VDSELPEDIR CNYYKLCCSQ NAFLHENLAQ  300
GINFKLIVGT ISEIVNIADA LRACKFTTSR DEFAMWDKTL KAFELLGMSV GFLRARLRRL  360
QRLAFESEGA EDTRRYIEAK AQQSQTQDEI RNIEARLVEL KGAWQRFDAE ISSLKSSAES  420
YELKFREVAN APW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194198KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.10840.0callus| fruit| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425870.10.0B3 domain-containing protein Os01g0234100
RefseqXP_006466621.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A067GV100.0A0A067GV10_CITSI; Uncharacterized protein
STRINGXP_006466621.10.0(Citrus sinensis)
STRINGXP_006425870.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-36B3 family protein