PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g013166m
Common NameCISIN_1g013166mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 449aa    MW: 48331.7 Da    PI: 6.3311
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g013166mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.39.5e-15232287358
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                        ++kr+rr+ +NRe+ArrsR+RK+a + eLe+ + +L ae ++L k l   ++++++
  orange1.1g013166m 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287
                        68******************************************999888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.8E-11230284No hitNo description
SMARTSM003383.4E-16230294IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.909232287IPR004827Basic-leucine zipper domain
PfamPF001701.4E-11233286IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.41E-10234283No hitNo description
PROSITE patternPS000360237252IPR004827Basic-leucine zipper domain
PfamPF124982.4E-28301420IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MNSVFSADDF SDSFLSSPSP PPASFHALPM NRSQSEWELE KFLQEVTVSP RAISSSSASD  60
NSVPAVIGPS VMSKSRAYEI GDDDVVEIKK SHRDQSLDPP VIPSSTAPVD SDEYRAYLKT  120
KLDLACAAVA LRTAPVKPED KSSLIENQTQ AAKPSELGSQ AMATVNVSTA HDALGTHPKA  180
DFRPLGSADL PAVQARPAAQ VRQSTSGSSR EDSDDDELEG DTETIEGLDS VDDKRARRML  240
SNRESARRSR RRKQAHLNEL ETQAGQLRAE HSSLLKGLTD VNQKYDESAV NNRILKADIE  300
TLRAKVKMAE ETVKRVTGLN PLLLARSDVP GVGMPLVNVP LDASRNATHP MQPNPNQFFH  360
QAIPSISTPT PNHQSLDSSF PSNIQLPTVG NPQSDRGGKN MTETSPLQHA VGLEHVPQGV  420
GHRVSPPGAV PGWDTGLPHA GSKNNKQR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246253RRSRRRKQ
2248253SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.61030.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443936.20.0light-inducible protein CPRF2 isoform X1
RefseqXP_006479609.10.0light-inducible protein CPRF2 isoform X1
TrEMBLA0A067FQX70.0A0A067FQX7_CITSI; Uncharacterized protein
STRINGXP_006479609.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58482645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02640.27e-45bZIP family protein