PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g013077m
Common NameCISIN_1g013027mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 451aa    MW: 51223 Da    PI: 5.4778
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g013077mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.94.2e-4571333127
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        +GfrFhPtdee+v+++L++k+ g +++++++ + vd++k+ePw+Lp+  ++ +e++ wyfF     kya++kr nr+t+sg+Wk+t kd+e+
  orange1.1g013077m   7 VGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQrsSMPKEDRVWYFFNAPVPKYANSKRINRTTNSGFWKSTCKDREI 98 
                        7***************************6555555**********95346667899************************************ PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127
                         +++g+++glkk Lvf++gr p+g +t+Wvmhey+
  orange1.1g013077m  99 WDERGKKIGLKKNLVFHEGRVPNGIRTKWVMHEYH 133
                        **********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100545.8295151IPR003441NAC domain
PfamPF023651.7E-227133IPR003441NAC domain
SuperFamilySSF1019417.85E-457151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEGHGVVGFR FHPTDEEIVT YFLERKMCGL DFPAHTIADV VDVCKYEPWE LPQRSSMPKE  60
DRVWYFFNAP VPKYANSKRI NRTTNSGFWK STCKDREIWD ERGKKIGLKK NLVFHEGRVP  120
NGIRTKWVMH EYHSLNASSY PEFVLFRLKK KSGAKPDARN EPTPQDLAFD SGNRAIENTN  180
PQINRGLPEE WQLFLSDTEL DYNLLADSNG FHDNTFSELP PNIQPERGTS INSSVFDRIL  240
QPMVQPERGT SINSSVFDRI LQPMVQPEHG TSYSDGFNNE PSFLNDSCLE TSEQEEAFVN  300
SLWADQGECF GERSMNTLRH DFNPTISLRG GRSIGQSSDA DSKIYQQHGK VPGTSNVFYE  360
KTHAQMETVW ALSETSSSSE GYGIMDFDVS SVNSDTDLPG IVGHESVVDE LQHTPKYHKY  420
FEARCSTQEL KTQRKVSDKA VSKVEVSMLK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-32813318139Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444690.20.0uncharacterized protein LOC18047065
RefseqXP_024044984.10.0uncharacterized protein LOC18047065
TrEMBLA0A067H3T10.0A0A067H3T1_CITSI; Uncharacterized protein
STRINGXP_006491406.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.22e-41NAC domain containing protein 50