PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g013027m

Common Name

CISIN_1g013027mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 452aa MW: 51351.1 Da PI: 5.6167

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g013027m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144.9	4.3e-45	7	133	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +GfrFhPtdee+v+++L++k+ g +++++++ + vd++k+ePw+Lp+ ++ +e++ wyfF kya++kr nr+t+sg+Wk+t kd+e+ orange1.1g013027m 7 VGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQrsSMPKEDRVWYFFNAPVPKYANSKRINRTTNSGFWKSTCKDREI 98 7*************************6555555******95346667899******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127 +++g+++glkk Lvf++gr p+g +t+Wvmhey+ orange1.1g013027m 99 WDERGKKIGLKKNLVFHEGRVPNGIRTKWVMHEYH 133 ********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	45.847	5	152	IPR003441	NAC domain
Pfam	PF02365	1.7E-22	7	133	IPR003441	NAC domain
SuperFamily	SSF101941	3.14E-45	7	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MEGHGVVGFR FHPTDEEIVT YFLERKMCGL DFPAHTIADV VDVCKYEPWE LPQRSSMPKE 60 DRVWYFFNAP VPKYANSKRI NRTTNSGFWK STCKDREIWD ERGKKIGLKK NLVFHEGRVP 120 NGIRTKWVMH EYHSLNASSY PKEFVLFRLK KKSGAKPDAR NEPTPQDLAF DSGNRAIENT 180 NPQINRGLPE EWQLFLSDTE LDYNLLADSN GFHDNTFSEL PPNIQPERGT SINSSVFDRI 240 LQPMVQPERG TSINSSVFDR ILQPMVQPEH GTSYSDGFNN EPSFLNDSCL ETSEQEEAFV 300 NSLWADQGEC FGERSMNTLR HDFNPTISLR GGRSIGQSSD ADSKIYQQHG KVPGTSNVFY 360 EKTHAQMETV WALSETSSSS EGYGIMDFDV SSVNSDTDLP GIVGHESVVD ELQHTPKYHK 420 YFEARCSTQE LKTQRKVSDK AVSKVEVSML K*

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MEGHGVVGFR FHPTDEEIVT YFLERKMCGL DFPAHTIADV VDVCKYEPWE LPQRSSMPKE  60
DRVWYFFNAP VPKYANSKRI NRTTNSGFWK STCKDREIWD ERGKKIGLKK NLVFHEGRVP  120
NGIRTKWVMH EYHSLNASSY PKEFVLFRLK KKSGAKPDAR NEPTPQDLAF DSGNRAIENT  180
NPQINRGLPE EWQLFLSDTE LDYNLLADSN GFHDNTFSEL PPNIQPERGT SINSSVFDRI  240
LQPMVQPERG TSINSSVFDR ILQPMVQPEH GTSYSDGFNN EPSFLNDSCL ETSEQEEAFV  300
NSLWADQGEC FGERSMNTLR HDFNPTISLR GGRSIGQSSD ADSKIYQQHG KVPGTSNVFY  360
EKTHAQMETV WALSETSSSS EGYGIMDFDV SSVNSDTDLP GIVGHESVVD ELQHTPKYHK  420
YFEARCSTQE LKTQRKVSDK AVSKVEVSML K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-33	8	152	20	165	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-33	8	152	20	165	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-33	8	152	20	165	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-33	8	152	20	165	NO APICAL MERISTEM PROTEIN
3swm_A	6e-33	8	152	23	168	NAC domain-containing protein 19
3swm_B	6e-33	8	152	23	168	NAC domain-containing protein 19
3swm_C	6e-33	8	152	23	168	NAC domain-containing protein 19
3swm_D	6e-33	8	152	23	168	NAC domain-containing protein 19
3swp_A	6e-33	8	152	23	168	NAC domain-containing protein 19
3swp_B	6e-33	8	152	23	168	NAC domain-containing protein 19
3swp_C	6e-33	8	152	23	168	NAC domain-containing protein 19
3swp_D	6e-33	8	152	23	168	NAC domain-containing protein 19
4dul_A	6e-33	8	152	20	165	NAC domain-containing protein 19
4dul_B	6e-33	8	152	20	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006444690.2	0.0	uncharacterized protein LOC18047065
Refseq	XP_024044984.1	0.0	uncharacterized protein LOC18047065
TrEMBL	A0A067H485	0.0	A0A067H485_CITSI; Uncharacterized protein
STRING	XP_006444690.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17987	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10500.1	1e-41	NAC domain containing protein 53

Link Out ? help Back to Top
Phytozome	orange1.1g013027m