PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g012756m
Common NameCISIN_1g008254mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 458aa    MW: 51049.7 Da    PI: 6.9821
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g012756mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.53.1e-28215269156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  orange1.1g012756m 215 KMKVDWTPELHKKFVQAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 269
                        5689*****************.********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011011.643130IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.9E-4262No hitNo description
PROSITE profilePS5129415.114212271IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-27213272IPR009057Homeodomain-like
SuperFamilySSF466891.08E-18214272IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-25215269IPR006447Myb domain, plants
PfamPF002497.6E-9218267IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MMKCIALGAV EFLRKPLSED KLRNLWQHVV HKAFNAGGSA LSDSLKPVKE SVVSMLHLKL  60
ENGESKNEKS ENTEYVLVPQ QSDNEQSVPN DKYPAPSTPQ LKQGGRLLDD IDCQDNTNFS  120
TEKESAEQDG ESKFVETTCG NSIAEGTLQE DKPQRPRETI VKEEHDPTNG SKTECNMLPL  180
PYEKDNLKGS NCVIENPSKA SGLQNSCGNK ANRKKMKVDW TPELHKKFVQ AVEQLGVDQA  240
IPSRILELMK VEGLTRHNVA SHLQKYRMHR RHILPKEDDR KWPHARDQML RNYYPHKPIM  300
AFPPYHSNHL VPTGPVYPVW GAPSNHLAAV QMWAPPGYPP WQQAESWNWK PYPGMPADAW  360
GCPVMPLPNG PYSSFPQGAS GYHNSGVDDN SYAMPQNSVD LHPAEEVIDK VVKEAISKPW  420
LPLPLGLKPP SADSVLAELS RQGISTIPPR INGSHPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-16220269655Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.176380.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436789.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_006485404.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_006485405.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-108APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A067DQE00.0A0A067DQE0_CITSI; Uncharacterized protein
STRINGXP_006485404.10.0(Citrus sinensis)
STRINGXP_006436789.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-110ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]