PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g012696m | ||||||||
Common Name | CISIN_1g011928mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | B3 | ||||||||
Protein Properties | Length: 459aa MW: 52365.3 Da PI: 6.4627 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.8 | 1.5e-16 | 94 | 181 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k++++s+v+ +l lp +f++ ++ + ++ ++e+esg+++++++ s+r+ l++GWk F +an+L egD++vF+l++ ++f orange1.1g012696m 94 FWKAMVKSNVSHGFWLHLPMRFCKFNMP--KIDTVFIVENESGEEYKINY----ISQRTALSGGWKAFSDANQLYEGDVLVFHLVEPTRF-- 177 6799*******************88863..477899**************....566778***********************9876666.. PP EEEE CS B3 93 vvkv 96 + + orange1.1g012696m 178 KAYI 181 4444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-18 | 88 | 185 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.67E-22 | 89 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.05E-21 | 92 | 183 | No hit | No description |
Pfam | PF02362 | 1.2E-14 | 94 | 181 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.985 | 94 | 185 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-19 | 94 | 185 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MEEQAEPETP LLQTTKIKRK KTAESKMKLT QVSEKPLDPD STPELGAFDS SKESKSRRKR 60 AMIDDLYDHA KVNSPVIERA EEVRANLAPS YPSFWKAMVK SNVSHGFWLH LPMRFCKFNM 120 PKIDTVFIVE NESGEEYKIN YISQRTALSG GWKAFSDANQ LYEGDVLVFH LVEPTRFKAY 180 IVRANGFGNV NADAKPLNSV PMDDELEVAP KDHSEKRVKK NKRAKRVKPP PGFHRDNNQS 240 NSLMLLETNN GHVEDQFNND TEDLGPNKVL PHSESSNFKE MKSIDDFTIL VDGLAIDHEL 300 SDQHRSKYYD LCCSQNSFLH DHLLKSINCK LAAEIITQTV NIAEAIRACN LSTSRADYEI 360 WDKTLKGFEL LGMNVGFLRA RLNRLMSLAF ESEESEVSKR LREVSAEQAR AEEEMRSLEL 420 KLLRLKETMG RLDSELESLK VKAEKHELKF QEEANAPW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.1381 | 0.0 | callus| fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006487085.1 | 0.0 | B3 domain-containing protein Os01g0234100-like isoform X2 | ||||
TrEMBL | A0A067DLM0 | 0.0 | A0A067DLM0_CITSI; Uncharacterized protein | ||||
STRING | XP_006487085.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 7e-33 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g012696m |