PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g012605m
Common NameCISIN_1g012605mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 461aa    MW: 49778.7 Da    PI: 6.5095
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g012605mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.6e-31250308259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  orange1.1g012605m 250 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 308
                        699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-31243310IPR003657WRKY domain
PROSITE profilePS5081133.109244310IPR003657WRKY domain
SuperFamilySSF1182903.01E-26247310IPR003657WRKY domain
SMARTSM007741.4E-37249309IPR003657WRKY domain
PfamPF031069.9E-26251308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MENYQGDLTD IIRAGGRQIG SNNSASVSAS SSSASVVSAS DHLNNPLPTW QFPSDPLSFC  60
SSIDDNRENL FGDPFSNTRD PLLHELNIPN SSGYYAPPPL PPADRVVDHE AATAASNINI  120
GRCHHHQRGL FHEDELKSPC NIFSRIQISP SSQSPKQQPA VSPCESPVIA AAAAAAASPR  180
GIKAPVVVAS DMINANSTSK SCLVDNTGPA QISSPRNLGI KRRKSQAKKV VCIPAPAAAN  240
SRSSGEVVPS DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CSARKQVERS RTDPNMLVIT  300
YTSEHNHPWP TQRNALAGST RSQPSKANAA AKGSVSPSSH QPPQNTTTNN SNTKENVKDS  360
SNDTTTLSPS NNNFNAAPSS STSVKEEIEE IEKPIDDDQM EGADLDEFSE GFSNSHEIYK  420
PALPDSNQSH EDFFADLGEI EADPLNLLFQ PRIQYWRSRE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-26224311280Disease resistance protein RRS1
5w3x_D9e-26224311280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006468371.10.0probable WRKY transcription factor 14
TrEMBLA0A067GDA30.0A0A067GDA3_CITSI; Uncharacterized protein
STRINGXP_006468371.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-82WRKY DNA-binding protein 14