PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g011483m | ||||||||
Common Name | CISIN_1g011483mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 485aa MW: 53514 Da PI: 7.7041 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.4 | 1.4e-33 | 128 | 185 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k orange1.1g011483m 128 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPK 185 8****************************************.***************85 PP | |||||||
2 | WRKY | 107 | 9.6e-34 | 306 | 364 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+ orange1.1g011483m 306 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHD 364 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-28 | 117 | 186 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.915 | 122 | 186 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-25 | 123 | 186 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-36 | 127 | 185 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-25 | 128 | 184 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.4E-38 | 291 | 366 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.29E-30 | 298 | 366 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.147 | 301 | 366 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-39 | 306 | 365 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-26 | 307 | 364 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MGVYIFFLIS VIFCFDVQVL PSPTTGAFQS FNWKSNIGSN DQQSVKQENK NQSDFSFPTQ 60 TRPNTTSSIA QQNQPWNYQE STKQDVKLAQ SFSTTLQSNN QSNSGFQSDF GNYQHQQSQP 120 IRESKKSDDG YNWRKYGQKQ VKGSENPRSY YKCTFPSCPT KKKVERSLDG QITEIVYKGS 180 HNHPKPQSTR RSSSSSVNSN AIQASTQHSN EIQDQSYATH GSGQMDSAAT PENSSISVGD 240 DDVDQGSQKS KSGGGGAGGG DDFDEDEPEA KRWKIEGESE GISAPGSRTV REPRVVVQTT 300 SDIDILDDGY RWRKYGQKVV KGNPNPRSYY KCTHPGCPVR KHVERASHDL RAVITTYEGK 360 HNHDVPAARG SGSRALPDNS SNNNHNSNSN SNNNGTLPVR ASAVAHHPNN NSILNPVHNL 420 RVSSSEGQAP YTLEMLQGSG SFGFPGYGNA LRSYMNEGQQ QDNVLSRAKE EPRDHDTFFE 480 SLLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-37 | 119 | 367 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-37 | 119 | 367 | 8 | 78 | Probable WRKY transcription factor 4 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.237 | 0.0 | fruit| vegetative meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}. | |||||
Uniprot | DEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000269|PubMed:19199048}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aleurone cells (PubMed:15618416). Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos (PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:26025535}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}. | |||||
UniProt | Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}. | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF708984 | 1e-110 | JF708984.1 Dimocarpus longan WRKY transcription factor 36-3 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431962.1 | 0.0 | WRKY transcription factor WRKY24 | ||||
Swissprot | Q6B6R4 | 1e-130 | WRK24_ORYSI; WRKY transcription factor WRKY24 | ||||
Swissprot | Q6IEQ7 | 1e-130 | WRK24_ORYSJ; WRKY transcription factor WRKY24 | ||||
TrEMBL | A0A067DH34 | 0.0 | A0A067DH34_CITSI; Uncharacterized protein | ||||
STRING | XP_006431962.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4583 | 27 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 1e-111 | WRKY DNA-binding protein 33 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g011483m |
Publications ? help Back to Top | |||
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