PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g011313m
Common NameCISIN_1g007551mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 490aa    MW: 56014.8 Da    PI: 5.1884
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g011313mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0013224245122
                        EEETTTTEEESSHHHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                        + C  Cgk F++  + ++H ++
  orange1.1g011313m 224 FYCVLCGKKFKSEKQWTNHEQS 245
                        78*****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1103.2E-23378IPR001623DnaJ domain
SuperFamilySSF465656.67E-22380IPR001623DnaJ domain
SMARTSM002718.8E-21668IPR001623DnaJ domain
CDDcd062576.22E-16765IPR001623DnaJ domain
PROSITE profilePS5007618.973776IPR001623DnaJ domain
PfamPF002262.0E-20873IPR001623DnaJ domain
PRINTSPR006252.2E-14927IPR001623DnaJ domain
PRINTSPR006252.2E-142742IPR001623DnaJ domain
PRINTSPR006252.2E-144868IPR001623DnaJ domain
PROSITE patternPS0063605372IPR018253DnaJ domain, conserved site
SuperFamilySSF576672.03E-14213266No hitNo description
SMARTSM004519.5E-6221255IPR003604Zinc finger, U1-type
PfamPF121717.9E-11224249IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS501579.141224253IPR007087Zinc finger, C2H2
PROSITE patternPS000280226248IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MASEKRCLYE VLGLRKECTT DEIRSAYKKL ALQRHPDKLV QSGLSQAEAT AQFQELVHAY  60
EVLSDPKERA WYDSHRSQIL FSDLNSASNC GPVPNLYSYF SNTAFSGYSD SGPNRKSRRV  120
MEEENKKLRK KAKREYNETV RELAAFVKKR DKRVMDMMVK KNEEIERKRE EEKERKKRLE  180
KERMERAKRY EEPAWARIDD EGDNEVGNEE GLEEEEIEKK RSEFYCVLCG KKFKSEKQWT  240
NHEQSKKHKE KVADLRESFV DEDEVMADFG ELDGEVEELG ERFKDNVGVE EREIGSGVGG  300
LSGDEDVESE FFDVADGVEV NEVDDRFGKE DEDEDEDADD EVNMLKAMLS GHKNRKRVAV  360
RKEDEVLKTE AHVENEIGES EFMEYDNCKS TRRKNKKDRG KKSGGEAAKG DRDGFKSTNE  420
EANGHHNSGV IEESSSHSCV GNKNNGISDN HSEKDPKIPD QPVDGKGTKK DRKAKLKNSS  480
KGNKTKAST*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125133KKLRKKAKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024954111.10.0DNAJ protein JJJ1 homolog isoform X2
SwissprotQ9C9116e-55JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A067FI040.0A0A067FI04_CITSI; Uncharacterized protein
STRINGXP_006477664.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.16e-47DNAJ heat shock N-terminal domain-containing protein