PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g010389m
Common NameCISIN_1g010389mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 513aa    MW: 53041.5 Da    PI: 8.6421
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g010389mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-056183123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C+k F r  nL+ H r H
  orange1.1g010389m 61 FVCEICNKGFQRDQNLQLHRRGH 83
                       89*******************88 PP
2zf-C2H212.20.00055137159123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +  +s++k H +++
  orange1.1g010389m 137 WKCDKCSKKYAVQSDYKAHSKVC 159
                        58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-66083No hitNo description
Gene3DG3DSA:3.30.160.601.7E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PfamPF121718.2E-56183IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355270102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.2E-4125157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.21E-6132157No hitNo description
SMARTSM0035595137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MPVDLENSST ASGEASVSST GNQNAPPKST NKKKRSLPGT PDPDAEVIAL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSNKEVKKR VYVCPEKSCV HHDPTRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DYKAHSKVCG TKEYKCNCGA VFSRRDSFIT  180
HRAFCDMLTK ESAKVQSEEP NLIEGMVKPN TESDPKVQPV DSSTSTPPTA VLAPALTKST  240
AAVSSSVSPG QSSEMPENSP QVVEEAPLSA ALNGSCSSSS SSSSTGTKSS SVFASLFASS  300
TASATLQPSQ TPVLTDLMRA MAPPERPTDV GSSSSTDPIA LCLSTNPGSS IFGSGGQEPR  360
QYSQPAMSAT ALLQKAAQMG AAASNATLLR GFGIVSSSSS ASAHEDSVRW SERSFESDNV  420
SLPGLGLGLP CEGSSGLKEL MMGTPSVFGP NKPTLDFLGL GMAAGGATPG VGRSALVPPA  480
GGALDVAAGA ASLGGGGGGG GEIAGKDIGT SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-31133201371Zinc finger protein JACKDAW
5b3h_F1e-31133201371Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425718.10.0protein indeterminate-domain 2
RefseqXP_006466759.10.0protein indeterminate-domain 2
RefseqXP_006466760.10.0protein indeterminate-domain 2
RefseqXP_006466761.10.0protein indeterminate-domain 2
RefseqXP_024036000.10.0protein indeterminate-domain 2
RefseqXP_024036001.10.0protein indeterminate-domain 2
SwissprotQ9LVQ71e-180IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A067GW030.0A0A067GW03_CITSI; Uncharacterized protein
STRINGXP_006466759.10.0(Citrus sinensis)
STRINGXP_006425718.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-129indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]