PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g009836m | ||||||||
Common Name | CISIN_1g007551mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 525aa MW: 59997.2 Da PI: 5.6572 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0014 | 224 | 245 | 1 | 22 |
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 + C Cgk F++ + ++H ++ orange1.1g009836m 224 FYCVLCGKKFKSEKQWTNHEQS 245 78*****************876 PP | |||||||
2 | zf-C2H2 | 13.2 | 0.00027 | 495 | 513 | 2 | 20 |
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C++Cg+ F ++ L++H+ orange1.1g009836m 495 VCEKCGQEFETRNKLHKHL 513 6*****************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.287.110 | 3.6E-23 | 3 | 78 | IPR001623 | DnaJ domain |
SuperFamily | SSF46565 | 7.46E-22 | 3 | 80 | IPR001623 | DnaJ domain |
SMART | SM00271 | 8.8E-21 | 6 | 68 | IPR001623 | DnaJ domain |
CDD | cd06257 | 6.35E-16 | 7 | 65 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 18.973 | 7 | 76 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 2.2E-20 | 8 | 73 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 2.6E-14 | 9 | 27 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 2.6E-14 | 27 | 42 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 2.6E-14 | 48 | 68 | IPR001623 | DnaJ domain |
PROSITE pattern | PS00636 | 0 | 53 | 72 | IPR018253 | DnaJ domain, conserved site |
SuperFamily | SSF57667 | 2.38E-14 | 213 | 266 | No hit | No description |
SMART | SM00451 | 9.5E-6 | 221 | 255 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 0.39 | 224 | 248 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 8.6E-11 | 224 | 249 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 9.141 | 224 | 253 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 226 | 248 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.6 | 494 | 518 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.349 | 494 | 523 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 496 | 518 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MASEKRCLYE VLGLRKECTT DEIRSAYKKL ALQRHPDKLV QSGLSQAEAT AQFQELVHAY 60 EVLSDPKERA WYDSHRSQIL FSDLNSASNC GPVPNLYSYF SNTAFSGYSD SGPNRKSRRV 120 MEEENKKLRK KAKREYNETV RELAAFVKKR DKRVMDMMVK KNEEIERKRE EEKERKKRLE 180 KERMERAKRY EEPAWARIDD EGDNEVGNEE GLEEEEIEKK RSEFYCVLCG KKFKSEKQWT 240 NHEQSKKHKE KVADLRESFV DEDEVMADFG ELDGEVEELG ERFKDNVGVE EREIGSGVGG 300 LSGDEDVESE FFDVADGVEV NEVDDRFGKE DEDEDEDADD EVNMLKAMLS GHKNRKRVAV 360 RKEDEVLKTE AHVENEIGES EFMEYDNCKS TRRKNKKDRG KKSGGEAAKG DRDGFKSTNE 420 EANGHHNSGV IEESSSHSCV GNKNNGISDN HSEKDPKIPD QPVDGKGTKK DRKAKLKNSS 480 KGNKTKTASK NSSNVCEKCG QEFETRNKLH KHLGDTGHAS LKFR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 133 | KKLRKKAKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006477664.1 | 0.0 | DNAJ protein JJJ1 homolog isoform X1 | ||||
Swissprot | Q9C911 | 6e-71 | JJJ1_ARATH; DNAJ protein JJJ1 homolog | ||||
TrEMBL | A0A067FEJ1 | 0.0 | A0A067FEJ1_CITSI; Uncharacterized protein | ||||
STRING | XP_006477664.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74250.1 | 6e-59 | DNAJ heat shock N-terminal domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g009836m |